Protein

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Genbank accession
YP_007237194.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTVSSSASTASFPGNGVTTVFPLPFRFFSNSDVEVSLLNVASGVVTPQSIGTNYTLSGAGDPEVDGNANSTLTMLVAPPPGVTLIVERVMDAVQQTDIINQARFFPEIHENVFDRLVMLIQQNASVIGRALLRPIGKDYFDALGYRIANLHDPIGSQDAATMAYVQQAIAALLEIGSGSANNAANVLYVPNGPNPTPLTVQNRLRQAIFLDDYKTTVVDGVTSNQVDLENALLACTTKGADLFWPDPVPRVSTSPLPTLHTVRHVGPGAIKADGLTFYVDPKYAQQNVIYMAPGGTGDGLSPSRPLNGFNGTLAALKNYAPLKSRWTVEGSAGTYFEDVQFPNYLASSHDNYLAWNFPAPAGLRAEPGTYPAILSGIGNTALTGFHTGIGNRMTVNNLCVANFYDNSLTNVRQVRRGIAVGAYSTLFLVNCASQGNGLSNLAALPSGTLIITGGRHKGSRYGIDNTAGRCSMTATTTTYAVVEDALEYGLYEKHDASTVSDYTEWRNNGKHPAAVLYGAAIFAYKSNASVDTRGNKFYANNICWNARGGFVADNPDIPDVYGTGVDANTRRFLCRGGGGDDLQTYRANRPAEISTRYTGGSTTSTTDVVLLNQIAEIREGYLANNDQSLRIRLIGRAQVADALITPQLRVNGSGVITLGTYRITAGKYGEIRLVVRPNIARTAFSVEFSCTDAVQNLGAAVGQIITTTTDLTVATLQVEVAGRADAGGTASFLTCMVDLLG
Physico‐chemical
properties
protein length:741 AA
molecular weight: 78829,62720 Da
isoelectric point:5,78976
aromaticity:0,08232
hydropathy:-0,05088

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007237194.1
1 741
Domain Start End Length (AA) Confidence
N-terminal 1 224 224 0,9962
Central domain 225 584 361 0,9493
C-terminal 585 741 156 0,9902
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-224
Central
225-584
C-terminal
585-741

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage AF
[NCBI] 		1235689 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007237194.1 [NCBI]
Genbank nucleotide accession
NC_019923.1 [NCBI]
CDS location
range 20994 -> 23219
strand +
CDS
ATGACTGTATCCAGCTCGGCCAGCACAGCTTCTTTCCCGGGGAACGGCGTCACTACCGTATTCCCACTTCCGTTCAGGTTCTTCAGCAACAGTGATGTTGAGGTTTCCCTTTTAAATGTTGCGTCGGGCGTTGTCACGCCGCAGTCCATCGGTACCAATTACACGCTTTCCGGCGCCGGCGATCCGGAGGTGGACGGGAACGCAAACAGCACGTTGACGATGCTTGTTGCGCCTCCGCCCGGGGTAACGCTGATTGTTGAGCGGGTCATGGATGCAGTTCAGCAAACCGACATCATCAACCAGGCTCGGTTTTTCCCTGAGATCCACGAGAACGTTTTTGACCGGCTGGTGATGCTTATTCAGCAGAACGCCAGCGTGATCGGCAGGGCATTGCTTCGCCCCATTGGGAAGGATTACTTCGACGCTCTCGGCTACAGAATTGCAAACCTGCATGACCCGATAGGCTCCCAGGACGCAGCCACGATGGCCTACGTTCAGCAGGCAATTGCAGCCCTTCTGGAGATCGGGAGCGGCTCTGCAAACAATGCGGCAAACGTGCTGTACGTGCCGAACGGACCAAACCCAACTCCGCTAACAGTGCAGAACCGGCTGCGCCAGGCAATTTTTCTGGACGATTACAAGACCACGGTCGTCGATGGCGTGACCAGCAACCAGGTCGACCTTGAAAACGCGCTTTTGGCTTGCACCACCAAGGGCGCCGATCTGTTCTGGCCTGATCCGGTTCCGCGCGTATCTACTAGCCCACTTCCCACCCTGCACACCGTTCGCCACGTTGGACCCGGAGCCATAAAGGCTGATGGGTTGACATTCTACGTCGATCCGAAATACGCGCAGCAGAACGTCATTTACATGGCCCCGGGGGGCACTGGCGACGGCCTATCTCCATCCAGGCCGCTGAACGGGTTCAATGGGACCTTGGCCGCCCTGAAGAACTATGCGCCTCTTAAATCTCGCTGGACTGTCGAGGGCTCCGCCGGAACCTACTTCGAAGATGTCCAGTTCCCGAACTATCTTGCAAGCTCGCACGACAATTACCTAGCTTGGAACTTCCCTGCACCAGCTGGGCTTCGCGCTGAACCTGGTACATACCCTGCAATCTTGAGCGGCATAGGAAACACCGCATTGACAGGATTCCACACAGGGATTGGTAACCGCATGACGGTTAATAACCTGTGCGTTGCAAACTTCTACGACAATAGCCTTACGAACGTTCGGCAAGTCCGCCGGGGTATTGCTGTAGGCGCATACTCCACCCTATTCCTTGTTAACTGCGCCAGCCAGGGAAACGGCCTATCAAACCTTGCCGCGCTTCCAAGTGGAACTCTGATTATCACAGGCGGCCGCCATAAAGGATCGAGATACGGAATCGACAACACTGCCGGTCGCTGCTCGATGACAGCGACAACCACGACGTATGCAGTCGTTGAGGACGCTCTAGAGTATGGACTTTATGAGAAGCATGACGCATCCACCGTTTCCGATTACACAGAATGGCGAAACAACGGTAAACATCCTGCTGCTGTCCTATACGGAGCCGCAATCTTTGCCTACAAATCAAACGCATCCGTAGATACTCGCGGAAACAAATTCTATGCGAACAACATTTGCTGGAACGCGCGCGGCGGATTTGTTGCGGATAACCCTGATATTCCTGATGTCTACGGCACAGGGGTAGACGCAAACACGCGCAGATTCCTTTGCCGAGGTGGCGGTGGTGATGATTTGCAGACATATCGTGCGAATAGGCCAGCCGAAATAAGCACTCGGTACACGGGAGGATCAACCACTAGCACGACGGATGTCGTCTTGCTAAACCAGATCGCCGAGATCCGCGAAGGCTATCTGGCGAACAACGACCAGTCGCTTCGCATCCGCCTCATTGGCCGCGCACAGGTGGCAGACGCGCTGATAACGCCGCAGCTTCGCGTAAACGGCTCCGGTGTCATCACGCTCGGCACCTACCGAATCACAGCAGGCAAGTACGGAGAAATCCGCCTTGTCGTGAGGCCGAATATCGCACGGACTGCATTCTCGGTTGAGTTTTCCTGCACCGATGCAGTCCAGAACCTCGGCGCGGCAGTCGGGCAGATCATCACCACCACGACTGACCTTACCGTCGCAACACTGCAGGTGGAGGTGGCAGGAAGGGCAGACGCCGGCGGAACAGCATCGTTCCTGACCTGCATGGTTGATCTTCTCGGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d8cfcab1be956288e466bc960eac23efb55792db481301271ace26528cb83597
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7935
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50