Protein

View in Explore
Genbank accession
DBA08569.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MADTIDLDGEKFVSPSFVTSAASLDDIYTAWVADFQGSTTAYNPSWPSADDSATLLPIPALWTGGADRLVVSTECGVEIVPYQFTSASTHYSQAIAGVSRYYSINCGLRLAIIFHPTGVDSGITSFSGNYNADLALFRGTHNRTSENVQFVARVVPGWQIDVAIKNTAQTAGLPVKLVVLNGTTVVSSTDLTTIVQGGVTLVTCSIYGGTVSGTVVDQAGQPATRIVHVHERETGSVIGRGRSDSSGLFEIPVIAKVGTTMYVVGLDDENSPLINAVIADRIVLE
Physico‐chemical
properties
protein length:285 AA
molecular weight: 30064,37930 Da
isoelectric point:4,68412
aromaticity:0,07719
hydropathy:0,20211

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DBA08569.1
1 285
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,6635
Central domain 20 218 200 0,4014
C-terminal 219 285 66 0,4553
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-19
Central
20-218
C-terminal
219-285

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP-D14I
[NCBI] 		2969639 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08569.1 [NCBI]
Genbank nucleotide accession
BK061585.1 [NCBI]
CDS location
range 27742 -> 28599
strand -
CDS
ATGGCCGACACCATCGACCTGGACGGCGAAAAATTCGTCTCTCCATCATTCGTCACCAGTGCGGCATCGCTCGACGACATCTACACCGCCTGGGTGGCCGACTTCCAAGGCTCAACGACTGCCTATAACCCTAGCTGGCCGAGTGCAGATGATAGTGCGACGCTGCTACCAATCCCGGCGCTGTGGACCGGCGGGGCCGATAGGTTGGTTGTTTCTACCGAGTGCGGTGTGGAGATTGTCCCCTACCAGTTCACCTCGGCGAGTACGCACTACTCACAGGCGATCGCAGGAGTTAGCAGGTACTACTCGATCAACTGCGGGCTGCGCCTGGCGATTATCTTCCACCCGACTGGTGTCGACTCAGGCATTACCAGCTTTTCGGGCAACTACAATGCGGATCTGGCGCTGTTTCGAGGTACGCATAACCGAACAAGTGAAAACGTCCAATTCGTGGCGCGTGTGGTTCCTGGTTGGCAAATCGACGTAGCCATCAAGAACACCGCCCAAACTGCTGGACTCCCCGTCAAGCTGGTGGTGCTCAATGGCACCACTGTGGTGTCTTCCACCGACCTGACTACGATCGTTCAGGGTGGTGTCACACTGGTGACATGCTCCATCTACGGTGGAACCGTCTCGGGCACCGTCGTGGACCAGGCTGGCCAGCCTGCTACCCGCATCGTCCATGTTCACGAGCGCGAAACAGGGTCGGTGATCGGTAGAGGACGCAGCGACTCATCAGGTCTGTTCGAAATTCCGGTTATCGCGAAGGTGGGTACCACCATGTACGTAGTCGGCCTGGACGATGAGAACTCGCCGCTGATCAACGCTGTGATCGCCGATCGCATCGTGCTGGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ec1ecc8530ac37e56ab8cb8e154aa9acae26f4513051702c82ba459974b5278b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5215
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank