Protein

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Genbank accession
YP_009856528.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MVTKTVIPADITKLKNESLNKNNNLSDIADRAAAWLNVRPIGSTPLAGDPVGDYDAATKRWVQNLISTGTVGPTMNGVMNYGVGDFHLRDSRAYIQPYEVVSDGQLLNRADWPELWAYAQMLSPISDAEWLADPHARGKYSVGDGQTTFRVPDRNGVQSGSFKGLFGRGDGGVTSNLGRTNESSAPNLTAYFRTVTDTSIIENDAASGAGYPTEAFQKYARLSAIKEEAALEIYPRRWNFDASRQSSVYGRYGNTDEITPNNFTGVWVIRASGGFVAANTSWSVINADKTTPDSGVVVSGGSVKSEYKSPSANVTAELKSSKVINGAWGVSLTITDDRGIPVSIKYDSNGQFSTSHRPSGVGTGSSYTHCAYRAPDWWNNTAYSAFVPILGGGSGNSLKNYRSFACFGQISYPDSSNSYPRAAIAQVRDWALPDGEQGNGKSITVFTFIDNSFDLQYGYNDGSLNYIFSKSPICDERLKKNIQSIDTNIAIGNIKQMPYKSYIYKNDENEQVRRGFIAQDLQKIDPQYVREYGDPGREKTLAIDENVMLLDSVAAIKWLINKVEELQEEINILKAK
Physico‐chemical
properties
protein length:576 AA
molecular weight: 63135,33010 Da
isoelectric point:5,65908
aromaticity:0,10243
hydropathy:-0,46215

Domains

Domains [InterPro]
DC_1514
STR
12–575
DC_1514
IPR030392
CHP
474–529
IPR030392 Coil
IPR030392
CHP
475–570
IPR030392
YP_009856528.1
1 576
Architecture
STR
STR 12-575 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009856528.1
1 576
Domain Start End Length (AA) Confidence
N-terminal 1 291 291 0,3404
Central domain 292 490 200 0,2489
C-terminal 491 576 85 0,9951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-291
Central
292-490
C-terminal
491-576

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage L6jm
[NCBI] 		2713222 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus L6jm
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009856528.1 [NCBI]
Genbank nucleotide accession
NC_048852.1 [NCBI]
CDS location
range 79768 -> 81498
strand -
CDS
ATGGTAACTAAAACAGTAATTCCTGCAGATATTACAAAACTTAAAAATGAGTCACTTAACAAGAATAATAACTTAAGTGACATAGCAGATCGCGCAGCTGCGTGGCTAAATGTTCGTCCTATTGGGTCTACTCCGCTTGCTGGAGATCCTGTTGGAGACTATGACGCCGCAACTAAGCGTTGGGTTCAAAACCTGATCAGCACTGGCACAGTTGGCCCTACAATGAATGGTGTTATGAACTATGGGGTAGGAGATTTCCATCTTCGAGATAGCCGTGCATATATTCAGCCATATGAAGTGGTTTCCGATGGTCAATTGCTGAACCGTGCTGACTGGCCGGAACTTTGGGCATATGCTCAAATGTTAAGTCCTATCAGTGATGCAGAATGGTTAGCAGATCCACATGCGAGGGGCAAATACTCCGTTGGTGATGGTCAAACAACCTTCCGTGTTCCTGATCGAAATGGTGTTCAATCTGGTTCCTTTAAGGGTCTTTTTGGACGTGGTGATGGTGGGGTAACTTCTAACCTCGGTAGAACGAATGAGTCTTCTGCTCCTAACTTAACTGCCTACTTCAGAACCGTAACTGATACGTCAATTATTGAAAATGATGCTGCAAGTGGTGCTGGATACCCAACCGAGGCATTCCAAAAATATGCTCGGCTAAGCGCTATTAAAGAAGAGGCTGCACTAGAAATATACCCACGTAGGTGGAACTTTGATGCTTCTCGCCAATCTAGTGTATATGGTCGTTATGGTAATACAGATGAGATTACACCTAATAACTTCACCGGTGTATGGGTAATCCGGGCGTCCGGTGGTTTCGTTGCAGCAAATACATCATGGAGTGTTATTAACGCTGATAAAACAACCCCCGATTCAGGTGTTGTTGTTTCTGGTGGTAGTGTTAAATCTGAATATAAATCGCCCAGTGCAAATGTAACAGCGGAACTAAAATCAAGTAAAGTAATTAATGGTGCATGGGGTGTTAGCTTAACTATAACAGATGATAGAGGGATCCCCGTAAGCATTAAGTATGACAGTAATGGTCAGTTTTCAACATCTCATAGGCCATCTGGAGTCGGTACTGGGAGTTCCTATACTCACTGCGCTTATCGCGCGCCGGACTGGTGGAATAACACAGCATATAGTGCCTTCGTCCCAATTCTTGGGGGTGGTAGTGGTAATTCACTAAAGAACTATAGATCTTTTGCTTGTTTTGGACAAATATCTTATCCTGATTCTAGTAATAGTTATCCTAGAGCTGCAATTGCTCAAGTAAGGGATTGGGCACTACCAGATGGTGAACAAGGTAACGGCAAGAGTATTACCGTGTTTACGTTTATTGATAATTCATTTGATCTTCAATATGGGTATAACGATGGTTCGCTAAACTATATTTTTTCAAAATCTCCGATTTGTGATGAAAGATTAAAGAAAAATATTCAGTCCATTGATACTAATATTGCAATAGGTAATATTAAGCAGATGCCCTATAAATCATACATCTATAAAAATGATGAGAATGAACAGGTGAGACGCGGTTTTATAGCCCAGGATTTACAGAAAATAGATCCCCAATATGTACGGGAATACGGAGATCCCGGAAGAGAGAAAACGTTAGCCATTGATGAAAATGTTATGTTGCTTGATTCCGTTGCTGCGATTAAGTGGCTTATTAATAAAGTTGAAGAATTGCAAGAAGAAATAAATATATTGAAAGCTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
07dadb9c692739af4bb27ed3a3f3381792fe83ebbe4650c14189b1bb3f913046
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6528
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of polyvalent bacteriophage infecting Salmonella choleraesuis and Escherichia coli Zhang,Y., Lin,Y. and Zhu,W. 2021-07-14 — GenBank