Protein

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Genbank accession
WBK39906.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPDKQVQLSTDFSAGEIGPRLGGRLDTGIFRKGASKIRNMIVQEDGGITKRTGSKKIKETLDYDAQADEWAGKKSRIISAVLGQNRPYIIELYDQKLRFSNADDNLTDGIDDLRPPEIGISRIIGSNLEDDQIDDYPDDANHNYIEADNKMYASWLLDPKYADTTEYPNSDKIVMFKLEGGDVNETDLYEVQFSVNGQDWYGSETFQDDGVFIIRPNQRAVYRDAQSISNEVNMVPLGNNSWWTDLGQFPNKYLTVTVTGPLQTTTDGFSISVGYVSSGYYLFAQLPDDISWSTESAVYVRIRNYSKSTAYKSFLWTKDAGDDPRYQRKTTPSGDQDKLLDVYTYRFSGWGEYARAAMYQDLTYARDTWSWSGKTWYSGQTYLIWSSIEDSIGEETIYTSDAIITAPWTEDEIFQVKYVQIGADIVMTHPHHQVYLLRISSGLPQLTELIISNPPSDLNIGPSPGPEENDTYPTCCTYFQGRLWLAGTVRTPNKVWVSKPGEYFDFEQNPDIGDASGFEFTINSQRANTILWMEGRTDLILGTSSAEWRVSGPNGLVTPSGIFANRQTTFGSANIQGKLINDAMFFVQRDSRKYREYLYTNEGQAYLSPDITMYAKHLTDSGIVDTAYAQDPDNMFYSVLANGKLATCTYNKAKQVLAWTLHETDGDYESVAIIPGVALEDDVWVSVRRGGKRYIERFAPRENNSAGDAVYMDSYVTKFAPGSTTFDGLDHLEGKEVYSVIDGEYFPLKTVENGQIELDQIGNVVHVGLPFTAELKTFRINSQFGIGLLMRVVKVVARVFHTIGLKAGEPPEDQMFREANDDAFLPFPPQDQDIEIDYPGGYESDGYVLLTHDYPTPFTLLALQLEYSVNDI
Physico‐chemical
properties
protein length:872 AA
molecular weight: 98207,93400 Da
isoelectric point:4,55788
aromaticity:0,12041
hydropathy:-0,46537

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBK39906.1
1 872
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,9416
Central domain 159 473 316 0,7290
C-terminal 474 872 398 0,0324
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-473
C-terminal
474-872

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacteraceae phage LS06-2018-MD07
[NCBI] 		3003840 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBK39906.1 [NCBI]
Genbank nucleotide accession
OP947163 [NCBI]
CDS location
range 11766 -> 14384
strand -
CDS
ATGCCCGATAAACAAGTTCAGCTATCAACTGACTTTTCAGCCGGTGAGATCGGCCCCCGTTTGGGCGGTCGTCTTGACACCGGCATTTTTCGTAAGGGAGCCAGCAAGATCCGGAACATGATCGTTCAGGAAGACGGCGGGATCACCAAGAGAACCGGATCAAAAAAGATCAAAGAGACCCTGGATTATGACGCCCAGGCAGATGAGTGGGCCGGCAAGAAATCCAGGATAATATCCGCAGTACTGGGCCAAAACAGGCCATACATAATCGAGCTGTATGATCAGAAGCTGCGGTTTTCCAATGCAGATGACAACCTGACCGACGGTATAGATGATCTTAGGCCACCTGAAATCGGTATCAGTAGGATTATTGGCTCTAACCTTGAAGACGACCAGATAGACGATTATCCAGACGATGCAAACCATAATTACATCGAGGCTGATAACAAAATGTATGCGTCCTGGCTACTCGATCCGAAATACGCAGATACTACCGAATACCCAAACTCTGACAAAATAGTCATGTTCAAGCTGGAAGGCGGCGACGTGAATGAGACGGATTTATATGAAGTTCAGTTCAGTGTAAACGGCCAAGACTGGTATGGAAGCGAAACATTCCAAGATGACGGAGTTTTTATTATCCGCCCGAATCAACGAGCTGTATACAGGGATGCTCAGAGCATATCCAACGAAGTCAATATGGTTCCCCTGGGGAATAATTCATGGTGGACAGACCTCGGGCAATTCCCCAACAAATACCTTACGGTTACTGTTACCGGCCCACTGCAAACCACAACCGACGGGTTCTCTATTTCTGTCGGATATGTTTCATCTGGGTATTATTTATTTGCACAGCTCCCGGATGATATCTCATGGTCAACAGAATCTGCCGTATATGTCAGAATCAGAAACTACAGCAAGAGTACCGCGTATAAATCTTTTCTGTGGACTAAAGACGCCGGTGATGATCCACGATATCAAAGGAAAACAACGCCATCAGGAGATCAAGACAAATTGCTCGACGTATATACTTATCGATTCTCTGGATGGGGAGAATATGCTCGGGCTGCAATGTACCAGGATTTGACATATGCCAGGGATACCTGGTCGTGGTCCGGGAAGACCTGGTATTCAGGGCAGACGTATCTGATATGGTCAAGCATAGAAGATTCTATCGGAGAAGAAACGATATATACCTCGGACGCTATCATTACGGCCCCGTGGACTGAGGATGAAATATTTCAGGTTAAATATGTACAGATAGGTGCCGATATAGTCATGACCCACCCACACCATCAGGTGTATTTGCTCCGAATCAGCAGCGGGCTCCCTCAGTTGACAGAGCTGATAATATCGAATCCGCCATCCGATCTGAATATAGGCCCGTCCCCAGGACCGGAAGAAAACGACACATACCCAACGTGCTGCACTTATTTCCAAGGACGGCTATGGCTTGCCGGAACCGTCAGAACACCGAATAAAGTATGGGTATCCAAGCCTGGAGAATACTTTGACTTCGAGCAGAATCCGGATATAGGAGACGCTTCTGGATTTGAATTCACGATAAATAGCCAGAGGGCAAATACCATTTTGTGGATGGAGGGCCGGACGGATCTGATTCTCGGTACATCATCTGCTGAATGGCGGGTAAGCGGCCCGAATGGTCTGGTTACTCCGTCTGGGATCTTTGCAAATCGTCAGACCACCTTCGGATCTGCAAACATCCAAGGGAAGCTGATCAATGACGCGATGTTCTTTGTTCAGCGGGACAGCAGAAAATATCGGGAATACCTGTACACAAATGAAGGCCAGGCATATCTGTCGCCGGATATCACCATGTACGCGAAGCACTTGACTGACTCCGGAATCGTTGACACCGCGTATGCTCAAGATCCTGACAATATGTTCTATTCAGTTCTTGCCAATGGGAAGCTGGCTACCTGTACATACAACAAGGCCAAGCAGGTCCTGGCCTGGACGCTCCATGAAACTGACGGAGACTATGAATCGGTAGCCATTATCCCCGGGGTAGCTTTGGAGGATGACGTATGGGTATCGGTAAGGCGCGGAGGGAAGCGATACATTGAACGGTTTGCCCCCAGGGAAAACAACTCTGCAGGAGACGCAGTTTATATGGATTCCTACGTGACCAAGTTTGCCCCTGGATCAACGACCTTCGATGGCCTGGATCACCTGGAAGGTAAGGAAGTTTACTCTGTAATCGACGGTGAATATTTCCCGCTGAAAACCGTAGAGAACGGACAGATCGAGCTTGACCAAATCGGGAACGTTGTCCACGTCGGATTGCCATTCACCGCAGAGCTGAAAACATTCCGTATCAATAGCCAGTTTGGAATTGGATTGCTCATGCGGGTCGTGAAGGTAGTCGCCAGGGTATTCCATACTATCGGCTTGAAAGCTGGAGAACCACCGGAAGACCAGATGTTCAGGGAGGCAAACGACGACGCCTTTCTGCCATTTCCCCCACAGGATCAGGACATCGAGATCGATTATCCTGGCGGATATGAGTCGGACGGATATGTGCTGTTGACGCACGATTACCCGACGCCGTTCACGTTGCTTGCTTTGCAACTTGAATATAGTGTAAACGATATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
cf255aa5185555b2138a91214f57c5f106bbc4d52741b430bad15ac1f0df368b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2745
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates Kosmopolous,J.C., Campbell,D.E., Whitaker,R.J. and Wilbanks,E.G. — — GenBank