Protein

View in Explore

Genbank accession

QYC52516.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,89

Evidence RBPdetect2

Probability 0,96

Protein sequence

MEYQDKVVEVLVTAPVADAGQTAGSGGGNFTGIETLNTPSTSLVGKGTPSSPLQSNVNISRRTGNRLTVVNDQNETGLFVGSAETKISSKAGNTIKEVTRTEAENAGDPSLEGIYSAPVSESVSSPNKTVKIAQVASDNSKSTIEVAVSAADNNALVVGEDGLSVPVSKSLDNTLEIRQGALYVRPQETQISQDPANKIELKPDGIFVETVKGDKGDTGEQGPAGPEGPQGPAGKDGAPGVEGPRGPEGERGPAGIGINVIAQLATVDQLPPVENYEDGDTFVIEGHFWTKTTVGDTSQWTDVGSFIGPEGLDAYEVAVQDGFEGTVDEWLASLRGADGIGLQLLGSFQSVDDLPMEDNKAGDAYIVQEQMWVWDTVQWAPVGQVGPEGKSAYQVWLANGNTGSQNDFLASLKGEKGDKGDKGDKGDKGEDGKNANAVNILGSVETEADLPDGADAGDAYLIGENVWVSDGAGKWTDLGSFRGPEGPRGIPGEKGDKGDTGAQGGVGKSNYDLAVEEGFTGTVAEYLESIKGAKGDQGPQGPRGLTGPKGDKGDTGTGLTVKGSVASVEDLPAEGNAEGDAYFVGTHMYVFLSGAWEDVGELKGEKGDKGDPGETGATGPAGPQGERGPQGVQGLKGDTGQTGPQGPAGKDGVDGTDGKDGTGLMPKGAVATIADLPSSGNSIGDFYTVEEDGRGYAWNGTEWIYSGVAQGPQGPAGENGADGAVGPQGPQGPKGDKGDMGHGILPKGTVPTQADLPTENNEIGDFYVADDTGIGYAWNGTTFINSGVSRGKDGEQGPQGEQGIQGEQGPAGPKGDTGDTGPQGPQGDIGPGVEIIGKLNDPSELPATGELGQGYLIDGDFWGWTGSAYENLGQIRGPAGPVGPQGNPGPVGEQGVRGEKGDQGSLWIVFGREPTPADGRVGDYFMNSSTLEFFRKTSATNWASLGHMGGGNVYDAPKDGKQYTRLDGDWEVLSVTEAPEDGGYYIRTNGQWQKLDRYDLRVVETTGAMDVSVSNCFKVDGTANKTMSLTGLPPDRAMTIVIRFLGKGAQLTWPSNLAWSNGTPPALGTTRTVVTLFWDGEFLTGTQAMTVD

Physico‐chemical properties

protein length:	1092 AA
molecular weight:	112722,58780 Da
isoelectric point:	4,30029
aromaticity:	0,06593
hydropathy:	-0,55568

Domains

Domains [InterPro]

DC_1512
ATT
1–89

DC_1512 DC_0915 DC_1340 G3DSA:1.20.5.320 IPR008160 G3DSA:1.20.5.320 DC_0582 DC_0449

IPR050149
Unmapped
212–905

IPR050149 G3DSA:6.20.230.10 G3DSA:6.20.230.10

DC_1340
STR
508–641

DC_1340 DC_1065

DC_1340
STR
625–730

DC_1340

QYC52516.1

1 1092

Architecture

ATT

STR

RBD

ATT

RBD

ATT 1-89 | ATT 117-388 | STR 399-831 | STR 840-881 | RBD 886-950 | ATT 951-997 | RBD 998-1092

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1512	ATT	DC_1512	1	89	Novel HMM	DC_1512	N-terminal	Low	Positional only	27 proteins / 27 hits
DC_0915	ATT	DC_0915	117	388	Novel HMM	DC_0915	N-terminal	Low	Positional only	48 proteins / 48 hits
IPR050149	Unmapped	-	212	905	InterPro	Collagen superfamily	-	-	-	-
DC_1340	STR	DC_1340	399	524	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
DC_1340	STR	DC_1340	508	641	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	530	581	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR008160	STR	DC_0536	605	660	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1340	STR	DC_1340	625	730	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	709	772	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1065	STR	DC_1065	734	831	Novel HMM	DC_1065	Central	Low	Positional only	109 proteins / 109 hits
DC_0582	STR	DC_0582	840	881	Novel HMM	DC_0582	Central	Low	Positional only	49 proteins / 49 hits
DC_0449	RBD	DC_0449	886	1092	Novel HMM	DC_0449	C-terminal	Low	Positional only	30 proteins / 30 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	951	974	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	975	997	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage SSBI34 [NCBI]	2861009	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Salmonella typhimurium [NCBI]	90371	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

QYC52516.1 [NCBI]

Genbank nucleotide accession

MZ520832.1 [NCBI]

CDS location

range 51998 -> 55276
strand +

CDS

ATGGAATATCAAGATAAGGTCGTTGAGGTTCTGGTAACGGCTCCTGTAGCTGACGCAGGTCAGACTGCTGGTTCCGGTGGCGGAAACTTCACTGGCATTGAAACCCTCAACACGCCTTCCACATCCCTTGTTGGTAAAGGCACCCCTTCTTCACCTCTTCAATCAAACGTCAACATCTCTCGTCGTACAGGTAACAGATTAACTGTAGTTAACGATCAGAATGAGACTGGTCTTTTCGTAGGCTCTGCTGAAACAAAGATTTCAAGCAAAGCTGGGAATACGATCAAGGAAGTCACTCGTACAGAAGCAGAAAACGCAGGGGACCCTTCCTTAGAGGGAATTTACTCTGCTCCGGTTAGTGAGTCTGTATCTTCCCCTAACAAGACTGTCAAGATTGCACAAGTTGCATCTGATAATTCAAAGTCTACCATTGAAGTTGCTGTTTCAGCAGCAGATAACAATGCCCTCGTTGTTGGTGAAGATGGTCTGAGTGTACCAGTGTCTAAGTCTCTTGACAACACACTGGAAATTCGTCAAGGTGCTCTGTATGTACGTCCACAAGAGACCCAGATCTCTCAAGATCCTGCAAACAAGATTGAACTGAAACCTGATGGTATCTTTGTAGAAACCGTAAAAGGTGATAAGGGAGATACAGGTGAGCAAGGACCAGCAGGTCCAGAGGGTCCTCAGGGTCCAGCAGGTAAAGACGGAGCACCTGGTGTAGAAGGTCCTCGTGGACCAGAGGGTGAAAGAGGTCCGGCTGGAATCGGCATCAATGTTATTGCTCAGTTGGCAACTGTTGATCAGCTTCCTCCTGTAGAGAACTACGAAGATGGCGACACCTTCGTTATTGAGGGTCACTTCTGGACTAAAACTACAGTAGGTGATACATCCCAGTGGACTGATGTCGGATCTTTCATTGGACCAGAAGGTCTGGATGCCTATGAGGTTGCTGTACAAGATGGTTTCGAAGGCACAGTGGATGAATGGTTGGCAAGTCTTCGTGGTGCTGACGGTATCGGTCTGCAACTTTTGGGTTCCTTCCAGAGTGTTGATGATCTTCCTATGGAAGATAATAAGGCTGGTGATGCCTATATCGTCCAAGAGCAAATGTGGGTTTGGGATACCGTCCAGTGGGCACCTGTTGGTCAGGTTGGACCCGAGGGGAAATCCGCATATCAGGTTTGGTTAGCCAACGGTAACACTGGTTCCCAAAATGACTTCCTTGCATCACTGAAAGGTGAGAAAGGTGACAAAGGCGATAAAGGTGATAAAGGAGACAAGGGTGAAGACGGTAAGAATGCCAACGCCGTAAACATCCTCGGATCTGTTGAGACAGAAGCTGACCTACCCGATGGTGCGGATGCAGGTGATGCATACCTCATTGGGGAAAACGTGTGGGTATCCGATGGTGCTGGTAAGTGGACAGACTTAGGTTCTTTCCGTGGCCCAGAAGGTCCTCGCGGCATCCCTGGTGAAAAGGGTGACAAAGGTGACACTGGTGCTCAAGGTGGAGTCGGTAAGAGTAACTATGACCTCGCGGTAGAAGAAGGATTCACAGGGACTGTTGCAGAATATTTGGAATCCATCAAGGGAGCCAAAGGTGATCAAGGCCCTCAGGGTCCTCGCGGACTAACTGGACCTAAAGGTGACAAGGGCGACACTGGGACAGGTTTGACAGTCAAAGGATCTGTTGCCTCAGTGGAAGACCTCCCTGCCGAGGGAAATGCCGAAGGTGATGCCTATTTCGTTGGAACCCACATGTACGTATTCCTGTCCGGTGCATGGGAAGATGTGGGTGAATTGAAAGGTGAAAAAGGCGACAAAGGCGACCCAGGGGAAACAGGTGCAACAGGACCTGCTGGACCTCAGGGTGAGAGAGGTCCTCAGGGAGTTCAAGGTCTGAAAGGGGATACCGGACAAACAGGACCGCAGGGGCCAGCAGGAAAAGATGGTGTTGACGGGACTGATGGTAAAGACGGAACTGGTCTGATGCCAAAAGGTGCTGTAGCAACTATCGCTGACCTACCTTCCTCTGGAAACTCAATCGGAGACTTCTATACGGTAGAGGAAGACGGAAGAGGATACGCTTGGAATGGGACCGAGTGGATTTACTCTGGTGTCGCACAAGGTCCTCAGGGACCAGCGGGTGAAAACGGCGCTGATGGTGCTGTTGGTCCTCAAGGCCCACAAGGTCCGAAGGGTGATAAAGGTGACATGGGTCACGGAATTCTCCCTAAGGGTACAGTACCAACTCAGGCTGACCTCCCCACTGAGAATAATGAAATTGGTGACTTCTACGTAGCTGATGATACAGGTATCGGTTATGCTTGGAATGGAACAACATTTATTAACTCAGGTGTTTCCCGTGGTAAGGACGGGGAGCAGGGACCTCAAGGTGAGCAAGGTATCCAAGGTGAGCAAGGACCTGCTGGACCTAAAGGGGATACAGGCGACACTGGTCCTCAAGGCCCACAAGGGGACATCGGCCCAGGTGTAGAGATCATCGGTAAGTTAAATGACCCTTCTGAGCTTCCAGCCACTGGGGAACTTGGTCAGGGATACTTGATCGATGGTGATTTCTGGGGTTGGACTGGATCAGCCTACGAGAACTTGGGACAGATTCGTGGTCCTGCTGGTCCAGTAGGTCCTCAGGGTAATCCGGGTCCCGTTGGTGAACAGGGTGTTCGGGGAGAGAAAGGGGACCAAGGTTCTTTATGGATCGTATTTGGTCGCGAACCTACTCCAGCCGATGGTCGTGTAGGTGACTACTTCATGAACTCCTCTACCCTAGAGTTCTTCCGCAAGACATCTGCAACGAACTGGGCATCTCTTGGACACATGGGTGGCGGGAACGTCTACGATGCACCTAAAGATGGGAAGCAGTACACCCGTTTAGATGGTGATTGGGAAGTTCTTTCTGTTACTGAGGCCCCTGAGGACGGTGGGTACTACATCCGTACCAATGGACAATGGCAAAAATTAGATCGTTACGACCTCCGTGTTGTTGAAACTACAGGTGCTATGGACGTATCTGTGAGTAACTGCTTTAAGGTTGACGGAACGGCTAATAAAACCATGTCTCTAACTGGACTCCCTCCTGACAGGGCGATGACTATTGTTATTCGTTTCTTGGGCAAAGGGGCGCAGTTGACTTGGCCTTCAAACCTTGCTTGGTCAAACGGTACACCTCCTGCTCTTGGCACAACCCGTACAGTGGTAACTCTGTTCTGGGATGGTGAGTTCCTTACCGGAACTCAGGCGATGACTGTTGACTAA

Genome Context

Tertiary structure

PDB ID

5ce26c7d386a26fbf284ec279ed1080fd4cf388ef525238e28063672bd56975a

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3178

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
SE-Phage-SSBI34 a novel bacteriophage of Salmonella typhimurium, provides insight in to genus certrevirus	Sattar,S., Khanum,S., Altermann,E., Bailie,M., Shamsi,B. and Ullah,I.	2022-01-25	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature