Protein

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Genbank accession
BAW98367.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MAEEISRVLSGWGPGPFTIKRSDGEPDIEVTPDADGQWQLELTADVAKTVTFNFEMNGKVVKTMPFTFVDIVEMRDVDYTVSETEVGRTAMVRTAPIGGVDRTPFPNIPVRFYYQDTDELIGKVTTNKYGIAEIEVPAESAVGARTIQARCGAMTKDLVVNWRAAGTVPLMTIDELTFTDKVLDLKVGDLSGIPKDSTGAVVPNKNIYVYDLNLLTNVTNEHTDLEGDLVGTTWNAPDGAELSSPRNLMVYCDNYAHEVAAELYIPPARVVSNLNYAVTEVQIHTAAFLPFKVVDPNGVPLVGEEIELIDQNTDEVLDTQVTDKYGIVEFTRIMSQQVSDSYFAARGKGVREGDSRAHIRVMTYGMKSAPDELREVMALESTETDVASLITFKAFALGKVWDFMEAECSVFIKNTMTKLPVTVLMDKSHHELGVTVDALPDGLYDAVVCYGNARHAVQLNWGGAASNEAISVEFEDFTPSVLKEDHTTRLHLNTLDSGSVLTKPSHPMKMTVRNKADLSDRGYGLVYPDGVARIDLLTLETDQDTSPTFEFMIDDRVLGEFTVPVEDLKVMASPHTSYGAIEGNDYQAGVYVYRVSDEQPVEGVILDVRDGVDNTQLIRGMTDKFGTLEFTIPYTEGETSRRFKVNSATSYYFSKTVYWNDLSEPRMTDIRILNFPEVVNGPIKTDVNVEVYDHEGNKQVSTWSNYTFTPGDTSKTSFFINDAGLGTASIGEFTPGENKVWFMTDDAMVSKVLTFERVQGVPGGVDMLGNVDAGVINSDITLTGNILNQYGDIYLPPADESFDLVMGETTAVGVIKPTGEFSVTVNYDVAGDIEAQFQIGGVSFATRTIKWRSAITLELSPMSQTKSESNGARLLVVLKDNDGLPLAGVPIAVNESATGDSVRLTSGTVADSSIGFSVILTPKEKPEGIVDYTLSACGLSQAFTMDWTIHESGVGNLLKDNLGYNNVYMTKTLKTATLAKFRAQITDRFGVPIPGPTPFGTFDNHTGVYVDRSNDVDENGWVEFGITQPDPNVTSFELYYGTDALVSSKTVAWRSGNPDYQSLVLDDGVSATINASAQEVVLTGKVLDSNGEPTTFSNWTQSPSCHGTDGVTAKPTYNSDGTWSLTRKYEAAGPLTLSFTSYYGDIYLGDIDLNIV
Physico‐chemical
properties
protein length:1156 AA
molecular weight: 126312,97950 Da
isoelectric point:4,46370
aromaticity:0,08910
hydropathy:-0,18391

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAW98367.1
1 1156
Domain Start End Length (AA) Confidence
N-terminal 1 172 172 0,7780
Central domain 173 849 678 0,4019
C-terminal 850 1156 306 0,0243
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-172
Central
173-849
C-terminal
850-1156

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pTD1
[NCBI] 		1938577 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus pTD1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAW98367.1 [NCBI]
Genbank nucleotide accession
AP017972 [NCBI]
CDS location
range 166639 -> 170109
strand -
CDS
ATGGCTGAAGAAATTTCACGCGTACTATCGGGATGGGGTCCCGGTCCTTTCACCATCAAACGCAGTGACGGTGAACCGGACATTGAAGTGACACCGGATGCCGATGGTCAATGGCAATTGGAGTTGACGGCTGACGTTGCAAAAACCGTTACGTTCAATTTTGAGATGAACGGTAAAGTGGTTAAGACCATGCCATTTACGTTCGTCGATATTGTTGAAATGCGAGACGTCGACTACACCGTGAGTGAAACGGAAGTGGGTCGTACTGCCATGGTTCGCACCGCTCCTATTGGTGGGGTGGACAGAACACCATTCCCTAACATTCCTGTGCGTTTCTATTACCAAGACACTGATGAGTTGATTGGTAAAGTAACCACGAACAAGTACGGCATTGCTGAAATTGAAGTTCCTGCTGAATCAGCAGTGGGTGCTCGAACCATTCAAGCTCGTTGTGGTGCCATGACGAAGGACTTGGTCGTTAACTGGCGTGCTGCTGGCACAGTCCCATTAATGACGATTGACGAACTGACCTTTACTGATAAAGTTCTTGATCTCAAAGTGGGGGACTTAAGCGGTATTCCTAAAGACTCCACCGGTGCAGTCGTACCAAACAAAAACATTTACGTTTACGACCTTAATTTGTTGACGAACGTTACCAACGAACACACTGACTTGGAAGGTGATTTGGTTGGCACGACTTGGAACGCACCAGACGGTGCGGAACTATCGTCTCCTCGTAACCTGATGGTTTATTGTGACAACTACGCTCACGAAGTGGCGGCAGAGTTATACATCCCACCTGCACGTGTTGTCAGTAACTTGAACTACGCCGTAACAGAAGTTCAAATCCACACGGCTGCCTTCTTACCATTTAAGGTTGTGGACCCTAACGGTGTTCCTTTGGTCGGTGAAGAAATCGAACTGATTGATCAAAACACCGATGAAGTGCTGGACACTCAAGTGACCGACAAATACGGCATCGTGGAATTCACACGTATTATGTCTCAGCAAGTGAGCGATTCTTACTTTGCAGCACGTGGTAAGGGTGTGCGTGAAGGTGACAGTCGTGCACACATTCGTGTAATGACTTACGGCATGAAGTCTGCACCTGATGAACTTCGTGAAGTGATGGCACTGGAATCTACTGAAACCGACGTGGCTTCATTGATCACCTTTAAAGCTTTCGCCCTTGGTAAGGTTTGGGACTTCATGGAAGCGGAGTGTTCTGTCTTCATTAAGAACACGATGACCAAACTTCCTGTGACAGTTTTGATGGACAAATCGCATCACGAACTAGGTGTTACGGTCGATGCTCTTCCAGATGGTCTGTATGACGCGGTAGTGTGTTACGGTAACGCACGTCACGCGGTTCAACTGAACTGGGGTGGTGCAGCGAGCAACGAAGCAATCAGTGTCGAGTTTGAAGACTTCACGCCAAGTGTGCTGAAAGAAGATCACACCACTCGTCTGCATTTGAATACGCTTGACAGCGGTTCAGTGTTAACTAAGCCGTCCCATCCGATGAAGATGACGGTACGTAACAAGGCTGACCTATCAGACCGCGGTTACGGTCTGGTTTATCCTGATGGTGTTGCTAGAATCGATCTGCTTACTCTTGAAACTGATCAAGATACTTCTCCTACGTTTGAGTTCATGATTGACGATCGAGTCTTGGGTGAATTCACGGTTCCGGTAGAAGACCTGAAAGTGATGGCATCACCTCATACGTCATACGGAGCAATCGAAGGTAATGATTACCAAGCGGGTGTTTACGTATACCGTGTCAGTGACGAACAGCCGGTAGAAGGGGTTATCCTCGATGTTAGAGATGGCGTGGACAACACTCAGTTGATCCGTGGCATGACCGATAAGTTCGGTACTTTGGAGTTCACCATCCCTTACACTGAAGGTGAGACATCAAGACGTTTCAAAGTAAACAGTGCGACCAGCTACTACTTCTCGAAGACGGTTTACTGGAATGACTTGTCAGAACCTCGCATGACCGACATTCGTATCCTTAACTTCCCAGAGGTTGTCAATGGTCCGATTAAGACCGACGTCAATGTGGAAGTTTATGACCACGAAGGTAACAAGCAAGTTTCTACATGGAGCAACTACACCTTTACTCCGGGCGACACATCTAAGACCAGCTTCTTTATTAATGACGCAGGTCTAGGTACAGCTTCTATCGGTGAGTTTACTCCGGGCGAAAACAAAGTGTGGTTCATGACTGACGACGCGATGGTTTCGAAAGTGCTTACCTTCGAACGTGTCCAAGGTGTTCCGGGTGGGGTTGACATGCTTGGTAATGTTGACGCCGGTGTGATAAATTCAGACATTACACTGACTGGTAATATCTTGAACCAATACGGTGATATTTACTTACCTCCAGCGGATGAGTCTTTTGACTTAGTCATGGGTGAAACCACTGCGGTAGGTGTGATCAAGCCAACGGGTGAGTTCAGTGTTACTGTCAACTACGATGTAGCGGGTGATATCGAAGCTCAATTCCAAATCGGTGGTGTGTCATTCGCGACGAGAACTATTAAGTGGCGTTCAGCGATCACTCTTGAGTTATCTCCGATGAGTCAAACTAAGTCAGAGAGTAACGGTGCTCGACTCCTTGTAGTTCTTAAAGATAACGATGGTCTGCCACTGGCTGGTGTTCCGATTGCAGTTAATGAATCGGCAACCGGTGACTCAGTGCGCTTGACTTCAGGTACCGTCGCTGACTCTTCAATCGGCTTCAGTGTCATCCTGACTCCTAAGGAAAAACCTGAAGGCATTGTGGATTACACGTTGTCTGCTTGTGGCTTGAGTCAAGCGTTCACGATGGATTGGACCATCCATGAAAGTGGGGTTGGTAATCTTCTTAAAGATAACCTAGGTTACAACAACGTTTACATGACCAAGACTCTTAAGACAGCCACCCTAGCTAAGTTCCGTGCTCAAATCACTGACCGCTTCGGTGTCCCTATTCCGGGGCCAACACCGTTCGGTACGTTTGATAACCACACTGGCGTTTACGTCGATCGTTCTAACGATGTGGATGAAAACGGTTGGGTGGAATTCGGCATTACGCAACCAGACCCTAACGTAACTTCATTCGAACTCTACTACGGTACCGATGCGCTTGTTTCTTCTAAGACAGTCGCATGGCGTTCTGGCAACCCTGATTACCAATCACTCGTATTGGATGACGGGGTGAGCGCTACGATCAATGCTTCAGCGCAAGAAGTCGTCTTGACCGGTAAGGTATTGGATTCTAATGGTGAACCTACCACGTTTAGTAACTGGACACAAAGCCCATCGTGCCACGGTACAGATGGTGTTACTGCTAAACCTACTTACAACAGTGACGGTACTTGGTCGCTTACTCGTAAGTACGAGGCCGCAGGTCCATTAACGTTAAGCTTCACGTCTTACTACGGTGATATCTACCTAGGTGACATTGATCTTAACATCGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
578d03fe25b74d87c4bc21f79b82943bfb8d1a26a8f06ff346de175279c4b91e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3038
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio Parahaemolyticus Bacteriophage pTD1 Midorikawa,Y. and Sano,M. 2017-07-13 — GenBank