Protein

View in Explore
Genbank accession
BBL19308.1 [GenBank]
Protein name
YadA domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,72
Protein sequence
MADNIKIEERVLDGDFVGPVTTEIDTKDFTGTVGLENSLLDGSGSEINIELSESMGVVGIDDLVEVKSEIDKSVNKAEASVEESQRQIDKANETIRNLDAISGQITNLVDTAKQAATTADNHAHDAQASETNAANSASEALSSKKAAKSSEKAAKTSQAAAKDSENKAKLSQDAASQKAREATAQADRAEQEADASLSSAKRSEQERVKAESAKSAAETARDQAAAKASDASHAAGNAYRSQQQALTSQNAAKSSETKAKASATAAANSASSMTQSVADARAARDVALQAQSDAEDARDVASGKATLATQKANAAASSASAASDSQAAAKSSEDNAADSENKAKTSETNAKASENAAKASQAAAKASQQAASSSQQSALRSSNEAKAARDAAKTSETKAKTSENNAKTSETNASSSAQKAERSNLASASSATASSESATASSESATAAKASQDEAKASETEAKASEKAAKASQSAASASQKSAQNFALIAGQNKDAAAGSAKAAKASENAAKVSENAAKVSETNAADSATRAAKSSSDASANQLAAKKSQDAAKVSETSAAASKNAAAASASQASKKASQSAASATAASDSAKAAAASATSSKGSAVASAGSASEAKEAETAAKKSRDEAESFAIEMRKGSVYRGTWNPNDGKYPTTPTTNSRWDVQLNNGQLEVDFDGKKWNWGDRLIYILDEKTFDIIESGTGVTSVNGDTGAVTVTPQNIGAARKTGEVFTGNVEITHGGDAELSVNAGTNKDAEFSLSEAAKRQGMYIKYAGSGNNHTYYGTRNNSNDVNFMYIPRGQNYPTFVGVPLVAATQPGAGNSLTRKDWTEATFVKKSGDQINGNLITTGYTRANNVQVGTLTSSDKSVLSGTQKIAVVGNDQLDKVDIKGKALTHNGNPVYSENNKPVPYDLGAVENNPDFRKYTRNYIVSKSANPLILGYEGNPVTFPEKSYYIRLYTKATATVTGATYYIKGNAPGAPIVKLVGQVGSGSNHPEVFYDSSDKRLKLRTPHTSNYTVVVYIEETSNDSNPWVDITEAYSTSNRPTWNSVTNKPSQATRWPTFSEVTGKPSKYPTDWDNVSGKPAMATRWPTWAEIGGKPSLFSGSWGDLKGKPNVVVDGQNVLNIGEIRFTSAGSSDAAGFLCTKESSKTHYDFQLSDDVNNDDWRWMFRYHKNASGEYKPMMTLVPYASDKARLTVNGGIYESGERVYSPNNKPSLTALGALGKTETASNANNLQGRTKDQIVAEARSGLTLAGYSYSKSESDNKYLTKTGKAADADKVDGIDSSRILYGNNQFGTMPQTNFNNNSKSGAIEMADKVSSNKPGRSNSWAWGWQTSHTSNSSTKKYGAQFVINQDSQAYYRVQSQDGSGTWATLYSTANKPTANDVGAVPKSGGSFTSNIKVSAPGTNRDALELNTGATNGGGVHIKMTDQSSGAQYGTFGYFHQDGSAYGGDAAFVIGTSPDTTKTNFVLTGRGNFKVGNNEVYHQGNKPTLEDVTKHVTVTKGLKLQANTWTTLLGKSDSLTETGVYQILINYTSAGKGGAAYSQYYTGQFAWYANNTNNSNVAEIPLHHMGHADSGEYIYLRTHTRPGNKGDQTVDIKCNRAYSAAVDFTIKLVKIM
Physico‐chemical
properties
protein length:1622 AA
molecular weight: 170501,69960 Da
isoelectric point:7,58200
aromaticity:0,06412
hydropathy:-0,66732

Domains

Domains [InterPro]
DC_0423
STR
12–205
DC_0423 IPR050252
Coil
Unmapped
67–101
Coil Coil DC_1415 DC_0608 DC_1938
Coil
Unmapped
349–369
Coil Coil DC_1415
BBL19308.1
1 1622
Architecture
STR
ATT
ATT
ATT
STR 12-205 | ATT 272-381 | ATT 390-937 | ATT 1122-1620 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage KIT04
[NCBI] 		2508207 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BBL19308.1 [NCBI]
Genbank nucleotide accession
LC487410 [NCBI]
CDS location
range 85341 -> 90209
strand -
CDS
ATGGCCGATAATATAAAGATAGAAGAAAGAGTACTTGATGGGGACTTCGTTGGTCCTGTCACTACTGAAATAGATACAAAAGATTTTACAGGTACCGTTGGGCTTGAAAATAGTTTACTAGATGGTAGCGGTTCGGAAATAAATATAGAGCTTTCAGAGAGTATGGGAGTTGTAGGTATTGATGATCTAGTAGAAGTAAAGAGCGAAATTGATAAATCTGTAAACAAAGCCGAGGCTTCAGTAGAGGAGTCTCAAAGACAAATAGATAAAGCTAATGAGACTATTAGAAATCTAGATGCTATTAGTGGTCAAATTACTAACTTAGTAGATACCGCCAAACAAGCAGCAACTACAGCAGATAACCATGCTCACGATGCTCAAGCCAGTGAGACTAACGCAGCAAATTCTGCATCAGAAGCATTGAGCTCTAAAAAGGCAGCTAAATCTTCTGAAAAGGCAGCTAAAACATCACAAGCAGCAGCAAAAGATAGCGAAAATAAAGCTAAACTTAGTCAGGATGCCGCTTCCCAAAAAGCTAGAGAGGCAACTGCACAAGCAGACAGGGCTGAACAGGAAGCAGATGCGTCTCTTAGCTCTGCAAAGAGATCCGAGCAAGAGCGTGTAAAAGCAGAATCTGCTAAGAGTGCTGCAGAGACGGCAAGAGACCAGGCAGCTGCCAAAGCAAGCGATGCTTCTCATGCTGCTGGTAATGCCTATAGATCTCAACAGCAAGCACTAACTAGCCAAAACGCAGCTAAATCTAGTGAAACTAAAGCTAAGGCTTCCGCTACAGCGGCAGCCAATTCAGCATCTTCTATGACCCAATCTGTAGCAGATGCCCGAGCAGCTAGGGATGTAGCTCTACAAGCTCAATCGGATGCAGAAGATGCTCGAGACGTTGCAAGTGGCAAAGCTACTCTAGCAACCCAAAAAGCGAATGCTGCAGCCTCAAGTGCATCAGCAGCATCAGACAGCCAGGCTGCTGCCAAGTCTAGTGAAGATAATGCAGCAGATAGCGAAAATAAAGCCAAGACTAGTGAAACTAACGCTAAAGCCTCTGAGAACGCGGCTAAGGCTTCTCAAGCAGCAGCTAAGGCGTCCCAACAAGCGGCTAGTTCTTCTCAACAATCGGCGTTACGCTCATCAAATGAAGCAAAAGCAGCTCGAGATGCCGCTAAGACTAGTGAAACTAAAGCTAAGACTAGTGAAAACAACGCTAAGACTTCTGAAACTAATGCAAGTAGTAGTGCACAAAAGGCAGAGAGAAGTAACCTAGCCTCAGCGTCATCAGCTACAGCCTCTAGTGAGTCAGCTACAGCCTCTAGTGAGTCAGCTACAGCAGCTAAGGCTTCCCAAGACGAGGCTAAGGCTAGTGAAACCGAAGCTAAGGCAAGTGAGAAAGCAGCTAAGGCTTCTCAGTCAGCGGCTAGTGCTTCCCAAAAGTCAGCACAGAACTTTGCTTTAATAGCAGGGCAAAATAAAGACGCGGCAGCAGGTAGTGCAAAGGCAGCTAAAGCAAGTGAAAATGCAGCTAAAGTAAGTGAAAATGCAGCTAAAGTCTCAGAGACTAATGCAGCAGATAGTGCAACTAGGGCAGCTAAATCTTCAAGTGACGCTTCAGCTAATCAATTAGCGGCTAAGAAGTCTCAGGATGCAGCTAAGGTTAGTGAGACTAGCGCAGCAGCGTCTAAGAACGCAGCCGCTGCTTCGGCATCTCAAGCTAGTAAAAAAGCGAGTCAGTCAGCAGCTTCAGCTACAGCAGCCAGTGATTCTGCTAAAGCAGCAGCGGCATCAGCTACCTCTTCTAAAGGCAGTGCAGTAGCTAGTGCGGGCTCAGCGTCAGAAGCTAAAGAGGCAGAAACCGCAGCCAAGAAGTCTCGCGACGAAGCTGAAAGCTTTGCCATAGAGATGCGTAAAGGTAGTGTGTATCGTGGTACTTGGAATCCAAATGACGGTAAATACCCTACTACACCGACAACTAACTCTCGTTGGGATGTTCAGTTAAATAATGGACAGTTAGAGGTAGACTTTGATGGTAAGAAATGGAACTGGGGTGACCGCCTAATCTATATTTTAGACGAGAAGACTTTCGACATTATAGAGTCTGGTACAGGTGTTACTTCTGTGAATGGCGATACTGGGGCTGTAACAGTGACTCCTCAGAATATTGGAGCTGCTAGAAAAACTGGTGAGGTATTTACTGGTAACGTAGAGATTACTCATGGCGGGGATGCTGAATTAAGTGTTAATGCTGGTACTAATAAAGATGCTGAGTTTAGCCTATCAGAAGCTGCTAAAAGACAGGGTATGTATATTAAATATGCAGGCTCTGGTAATAACCATACTTACTACGGTACTAGAAATAATAGTAACGATGTTAACTTCATGTACATTCCTCGTGGGCAGAATTACCCTACATTTGTAGGTGTACCATTAGTAGCTGCTACGCAACCTGGGGCAGGTAACTCTCTAACACGTAAGGACTGGACAGAAGCTACCTTTGTTAAAAAGTCTGGTGATCAAATCAATGGCAATCTAATTACTACTGGTTATACCCGTGCAAACAACGTACAAGTTGGTACATTGACCTCTAGCGATAAGTCTGTTCTATCAGGTACACAGAAGATTGCCGTAGTTGGTAATGATCAACTAGATAAAGTAGATATTAAAGGTAAAGCTCTAACCCATAATGGTAATCCAGTTTACTCAGAAAACAATAAGCCTGTTCCATATGACTTGGGTGCTGTAGAAAACAATCCTGACTTTAGAAAGTACACTAGAAACTATATTGTTAGTAAGTCAGCTAACCCACTTATTTTAGGTTATGAAGGTAATCCTGTAACCTTCCCTGAAAAATCTTATTATATTAGGTTATATACTAAGGCAACTGCTACAGTTACTGGGGCTACTTACTATATAAAAGGTAATGCGCCCGGAGCTCCTATAGTTAAGTTGGTTGGTCAAGTAGGGAGTGGCAGTAACCACCCAGAAGTATTCTATGATTCTTCTGATAAACGTCTGAAACTACGCACTCCACATACCAGCAACTATACTGTAGTGGTATATATAGAAGAGACTTCCAATGACTCTAACCCTTGGGTTGATATCACAGAAGCATATAGTACATCTAATAGACCAACTTGGAACTCAGTAACTAATAAACCATCCCAAGCAACAAGGTGGCCTACCTTCAGCGAGGTTACTGGAAAACCTAGTAAGTATCCTACTGATTGGGACAATGTTTCTGGTAAACCAGCAATGGCTACTCGCTGGCCTACTTGGGCTGAAATAGGGGGTAAACCCTCTCTATTCTCAGGTAGCTGGGGCGACCTAAAAGGTAAGCCTAATGTAGTAGTAGATGGACAAAACGTCCTGAACATCGGTGAGATACGCTTTACTAGTGCTGGCAGCTCTGATGCAGCAGGTTTCTTATGTACTAAAGAGAGCAGTAAAACTCACTATGACTTCCAGTTGTCAGATGATGTTAATAATGATGATTGGAGATGGATGTTCCGCTACCACAAGAATGCATCGGGAGAGTACAAACCTATGATGACGTTAGTCCCTTATGCATCTGATAAGGCACGACTAACTGTCAACGGAGGTATATACGAGTCTGGGGAGAGGGTTTACTCGCCTAATAATAAACCTAGCTTAACAGCTCTGGGTGCGTTAGGTAAGACCGAAACTGCTAGTAACGCTAACAACCTACAAGGTAGAACCAAAGATCAAATCGTTGCAGAGGCTCGTAGTGGTTTAACACTAGCCGGATACAGTTACTCTAAATCTGAATCTGATAATAAATATCTAACCAAGACTGGTAAAGCAGCTGATGCTGATAAAGTAGATGGTATTGATTCTTCTAGAATTCTGTACGGTAACAATCAGTTCGGTACTATGCCACAAACTAATTTTAATAACAACAGTAAATCTGGCGCTATTGAAATGGCGGATAAAGTATCTAGTAATAAACCGGGCCGTTCTAACTCTTGGGCTTGGGGTTGGCAAACTAGTCATACTAGTAACTCTAGTACCAAAAAATATGGTGCTCAATTTGTTATTAATCAAGATAGTCAGGCATACTATCGAGTACAAAGTCAAGATGGGTCGGGTACTTGGGCTACTTTATATTCTACAGCTAATAAACCTACAGCTAATGATGTAGGGGCGGTTCCTAAGTCTGGGGGCTCATTTACTTCAAACATTAAGGTGTCTGCACCAGGTACTAATAGAGACGCATTAGAACTTAACACCGGAGCTACTAATGGTGGCGGTGTTCACATCAAGATGACAGACCAGTCGAGCGGTGCTCAGTATGGTACTTTTGGTTACTTCCATCAAGATGGTTCAGCTTATGGTGGTGACGCAGCATTTGTTATTGGAACATCGCCAGATACAACTAAGACTAATTTTGTATTAACTGGTCGAGGTAATTTTAAGGTTGGAAATAATGAGGTGTATCACCAAGGTAATAAACCTACACTCGAAGATGTTACTAAACATGTTACAGTTACTAAGGGTTTAAAACTTCAAGCTAATACTTGGACTACTTTACTTGGTAAGAGTGACAGTCTTACAGAAACAGGTGTATACCAGATACTAATTAACTATACCTCAGCTGGTAAAGGTGGAGCTGCTTACTCACAATACTACACTGGGCAATTTGCATGGTATGCAAATAATACTAATAATAGTAATGTTGCTGAGATTCCGTTACATCATATGGGACATGCAGATAGTGGTGAGTATATTTACTTACGAACACATACCAGACCCGGTAATAAGGGTGACCAGACAGTCGATATAAAATGTAACCGAGCATACTCTGCTGCGGTAGACTTTACTATCAAGCTCGTGAAAATTATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54dd865397c7091db2b1f564a247a461be058accf2d64331e4ce0bb913dde5f0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6196
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus bacteriophage KIT04 Vo,T.T.A., Pham-Khanh,N.H. and Kamei,K. 2023-02 — GenBank