Protein

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Genbank accession
APD17795.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MTINIGRVNEGNLQQEIIDAYKSLRSFAGIALPDPLNTTTSVTLPAANVNGTFSIIHLAAATEGGGVRGSSFTTNTDGTITCNKDMFAVSVTCYAKAKYGTNSDAVLGVGIGNPTQIPNKPGLQVGENYVSRFQYSSFGRGNNRPVTLLTPYEPVGKSTTELNVNGVKVGDKLFPVMWTTDTEGSVTLTLTDLIFTVQEISI
Physico‐chemical
properties
protein length:202 AA
molecular weight: 21430,90700 Da
isoelectric point:5,37603
aromaticity:0,07426
hydropathy:-0,05495

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF4
[NCBI] 		1916110 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD17795.1 [NCBI]
Genbank nucleotide accession
KY065147.1 [NCBI]
CDS location
range 8679 -> 9287
strand +
CDS
ATGACTATTAATATCGGTAGAGTTAACGAAGGTAATTTACAACAAGAAATTATTGATGCTTACAAATCTTTGAGATCTTTTGCAGGTATTGCTTTACCTGATCCACTTAACACAACCACCTCTGTAACACTACCAGCAGCAAATGTGAACGGTACCTTCTCTATTATCCACCTTGCGGCGGCGACAGAAGGTGGTGGAGTTCGTGGGTCATCGTTTACAACTAACACTGACGGAACAATCACATGTAATAAGGATATGTTTGCTGTTTCAGTAACATGCTACGCAAAAGCTAAGTACGGTACTAATAGTGACGCTGTCTTGGGGGTTGGGATTGGAAATCCTACACAGATCCCAAACAAACCAGGTTTACAGGTCGGTGAGAACTATGTGTCTCGATTTCAATACTCTAGTTTTGGGAGAGGCAACAACAGACCAGTTACACTTTTAACCCCATATGAACCTGTTGGTAAATCAACTACAGAACTGAATGTGAATGGTGTAAAAGTTGGGGATAAATTATTTCCAGTAATGTGGACTACTGATACTGAAGGTTCTGTGACGCTAACCCTCACAGACTTAATCTTTACAGTACAAGAGATCAGTATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
38074abd83fbfc1b860283a7ebd60e34d79d5a65dd38cda69ba6d3c566c5b9c2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6107
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Environmental bacteriophages active on biofilms and planktonic forms of toxigenic Vibrio cholerae: Potential relevance in cholera epidemiology Naser,I.B., Hoque,M.M., Abdullah,A., Bari,S.M.N., Ghosh,A.N. and Faruque,S.M. 2017 28700707 GenBank