Protein

View in Explore
Genbank accession
ATE85753.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIYDAGTASLAADGTVTGVGTTWRQPLTLIRVGATMIFNTTPASIVTIAEIISDTEIRVFNDKGFTAPAGTQYSILAHDGITVQGLAQDVAETLRYYQSNNYVTADENGNVEIQNGGTGASSAPDARANLGLGSAATFDTVPVANGGTGANNASDARDNLGLGPLSTSNVAPIENGGTGVTTREELWPIVRPFDVYGNVGRRMGLPDGITRNHITMWNSADTPSAGFMNYLEGGWFNGAWRIGGIRGGGQDLAACQLTVDSGQGMNYDYVFNNNGTASAANWVSTSDRRVKKDIVEIADPLTKMRSIRGVSWTMRFKNNPLKGFGFVAQEVQKYFPDAVSVVNKNPMTLEDDTVVEGVMSVDTSGVSAALHHEAILTLMDKIEVLESRISSLEAGGK
Physico‐chemical
properties
protein length:398 AA
molecular weight: 42157,51080 Da
isoelectric point:4,78922
aromaticity:0,07286
hydropathy:-0,16633

Domains

Domains [InterPro]
DC_0022
STR
1–398
DC_0022
IPR030392
CHP
287–340
IPR030392
IPR030392
CHP
287–390
IPR030392
ATE85753.1
1 398
Architecture
STR
STR 1-398
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf12
[NCBI] 		2024315 Uroviricota > Caudoviricetes > Drexlerviridae > Eastlansingvirus > Eastlansingvirus Sf12
Host Escherichia coli B
[NCBI] 		37762 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATE85753.1 [NCBI]
Genbank nucleotide accession
MF158039.1 [NCBI]
CDS location
range 13084 -> 14280
strand +
CDS
ATGGCAATTTATGACGCAGGAACAGCATCGCTTGCGGCTGACGGAACTGTAACTGGTGTTGGTACTACCTGGAGGCAGCCGTTAACTCTAATTCGAGTTGGTGCGACGATGATTTTCAACACCACGCCAGCAAGCATTGTAACTATTGCTGAAATTATCAGCGATACAGAAATTAGAGTTTTTAACGATAAGGGCTTTACCGCGCCAGCAGGAACCCAGTACTCAATTCTTGCTCATGACGGAATTACTGTTCAGGGATTGGCTCAGGATGTTGCAGAGACACTTAGATATTACCAGTCTAATAACTATGTAACCGCAGATGAAAATGGAAACGTTGAAATTCAGAATGGAGGTACAGGTGCAAGTAGTGCACCAGATGCACGAGCTAACTTAGGTTTAGGTTCGGCAGCTACATTTGATACCGTTCCTGTAGCTAACGGCGGCACAGGTGCTAACAACGCATCTGACGCGCGCGATAACCTTGGGTTAGGTCCATTATCTACATCTAATGTGGCACCAATAGAGAACGGCGGGACTGGAGTAACAACTCGAGAGGAGCTATGGCCTATCGTTCGACCTTTCGACGTGTACGGTAACGTTGGACGCCGAATGGGTTTACCGGACGGTATCACACGAAACCACATCACTATGTGGAACTCGGCAGACACGCCGTCGGCAGGTTTCATGAACTATTTAGAAGGCGGATGGTTCAACGGTGCATGGCGTATCGGTGGGATACGTGGCGGTGGACAGGATCTGGCAGCATGCCAACTGACAGTTGACAGCGGTCAAGGTATGAATTATGACTATGTGTTCAACAATAACGGTACAGCGAGCGCTGCAAACTGGGTCAGCACATCTGACCGACGCGTAAAAAAAGACATCGTTGAAATAGCAGACCCGCTAACTAAGATGCGCTCGATTCGAGGCGTATCATGGACTATGCGCTTCAAAAATAACCCCCTTAAAGGTTTCGGCTTTGTGGCACAGGAAGTGCAAAAGTATTTTCCTGATGCCGTTAGTGTGGTAAACAAAAACCCCATGACACTTGAAGACGATACAGTTGTTGAGGGTGTCATGAGCGTTGACACATCTGGAGTGTCCGCTGCACTACATCACGAAGCCATACTGACACTGATGGATAAAATTGAAGTTCTTGAGTCACGAATATCTTCTCTTGAGGCTGGAGGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3429de8c849d7de10280e9032c06d23557f4959527ce67b164d7e8860b86c2c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7776
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank