Protein

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Genbank accession
XOD32562.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
TSP
Evidence RBPdetect
Probability 0,59
Protein sequence
MRRTTNTWAQGIIRVGNQENGSDPQAIYEFHYNGTFYAPSLLKSNRLSAGGGDPVWTGPCLVIGDNDTGLVHGGDGRINMVANGVHIANWGAGYQSHPGLWDSTGAFWTEVGRAIVSHGHLVQANDSYSTFVRDVYVRSDIRVKKDLVKFENASQKLSKFNGYTYMQKRGLDEEGNQKWEPNAGLIAQEVQAILPELVEGDPDGEALLRLNYNGVIGLNTAAINEHTAEIAELKSEIEELKALVKSLLK
Physico‐chemical
properties
protein length:249 AA
molecular weight: 27312,18220 Da
isoelectric point:5,51068
aromaticity:0,08434
hydropathy:-0,39839

Domains

Domains [InterPro]
DC_0421
STR
3–249
DC_0421
IPR030392
CHP
139–237
IPR030392
IPR030392
CHP
139–198
IPR030392 Coil
XOD32562.1
1 249
Architecture
STR
STR 3-249
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD32562.1
1 249
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0011
Central domain 11 209 200 0,1025
C-terminal 210 249 39 0,9895
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-249

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb4
[NCBI] 		3387549 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD32562.1 [NCBI]
Genbank nucleotide accession
PQ666542 [NCBI]
CDS location
range 159910 -> 160659
strand +
CDS
ATGCGACGCACTACTAATACCTGGGCGCAAGGTATTATTCGTGTAGGTAACCAGGAAAATGGTTCTGACCCACAAGCTATATATGAATTCCACTATAATGGAACTTTTTATGCCCCGAGCTTACTTAAGAGCAACAGATTATCAGCTGGCGGTGGTGACCCGGTGTGGACTGGGCCATGTCTTGTTATTGGTGATAATGATACTGGTTTAGTCCATGGCGGTGATGGCCGAATCAATATGGTTGCCAATGGTGTTCATATTGCAAACTGGGGCGCAGGCTATCAATCTCATCCTGGGCTTTGGGATTCAACCGGTGCTTTTTGGACAGAAGTTGGAAGAGCTATCGTTTCTCATGGGCATCTCGTTCAGGCAAATGATAGTTATTCAACGTTTGTCCGTGATGTTTATGTCCGTTCTGATATTCGCGTTAAAAAAGACCTCGTTAAATTTGAAAATGCTTCTCAGAAGCTTTCTAAATTTAACGGTTACACTTATATGCAGAAGCGAGGCCTGGATGAGGAAGGTAATCAGAAATGGGAACCTAACGCCGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCAGAATTAGTTGAAGGTGACCCTGATGGTGAAGCTTTACTTCGTTTGAACTATAACGGTGTAATTGGTTTAAATACAGCTGCAATCAATGAGCATACCGCAGAAATTGCAGAACTTAAATCAGAAATCGAAGAACTTAAAGCATTAGTTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d1579d50d04cc2ab0077cd6359a4cead7cf4786cbaefa46c22d5bf46944e180a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7233
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50