Protein

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Genbank accession
XMR02065.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRLFDYGNTVEAPTVKKFDSIGMGRNSNGGGNWLGAILATNGNLYGMGTTKAITFGITPNNGAGVELVRKNVKNFWLLSNGIIVQDIDGSYNFCGVYANGIFTNTGMTTAPFLTSGFIDVSSYFTSVGDVVDMVFSGGYDKGPGTNTGYTSKYSCILAALNSNGEVWYMGQSFQGLINNSTADYYFSSFTKDNQLTQKAVSLRSTIDMSHNNVYYNGARPVLYAKLLDGTIVGKGYNIRYGIQTPASANQVIKTWTTVATIGTADDYDASNEGMMYCSNSQLYRCGRGGGFSYWNGSSSVYCMGYNVGMSLSGVNNVNSIGGGFNVLTTGLKDNIFGNIPTSSSTKIRMNYCGTVIFEPGLTSLYKAHGVYTDYYYSPAWNAGEVSEFTYEDIGIRIKDAMYVGGTLGFTTYGLLVISTEGKLYWRGIYNGTQYSTLTEIPLQ
Physico‐chemical
properties
protein length:447 AA
molecular weight: 48437,77000 Da
isoelectric point:6,15694
aromaticity:0,13647
hydropathy:-0,10313

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR02065.1
1 447
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6865
Central domain 11 220 211 0,8098
C-terminal 221 447 226 0,2583
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-220
C-terminal
221-447

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR02065.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 331313 -> 332656
strand -
CDS
ATGTTACCTTTTGTTAGATTATTTGATTATGGGAATACAGTAGAAGCTCCAACTGTAAAGAAATTCGATTCCATTGGTATGGGTCGTAATAGTAATGGAGGTGGAAACTGGCTTGGTGCAATATTAGCAACCAATGGGAATTTATATGGCATGGGCACAACTAAAGCAATTACATTTGGAATAACTCCTAATAATGGTGCAGGTGTTGAATTGGTTCGTAAAAATGTAAAAAACTTTTGGTTACTTTCTAATGGTATCATAGTACAGGATATTGATGGTTCGTATAATTTTTGTGGTGTATATGCAAATGGAATATTCACAAATACAGGGATGACGACTGCACCATTTTTAACATCTGGATTCATCGATGTTTCGTCATATTTCACTAGCGTTGGTGATGTCGTTGATATGGTATTCAGTGGTGGGTATGATAAAGGTCCAGGCACTAATACTGGGTACACATCCAAATATAGTTGTATTTTGGCAGCATTGAACTCAAACGGAGAAGTCTGGTATATGGGTCAGTCCTTTCAGGGTTTAATAAACAACTCCACAGCAGATTACTACTTTTCATCTTTTACTAAAGATAACCAATTGACACAAAAAGCAGTTTCATTACGAAGTACAATTGATATGTCACATAATAACGTTTATTATAATGGGGCTAGACCAGTACTGTATGCCAAATTATTAGATGGGACCATAGTCGGTAAGGGATATAATATCAGATATGGCATACAAACACCAGCTAGTGCAAACCAAGTAATTAAAACTTGGACTACTGTAGCTACAATTGGAACAGCAGACGACTATGACGCATCAAACGAAGGTATGATGTACTGTTCAAATTCACAATTATATCGTTGTGGTCGTGGCGGCGGTTTTTCTTACTGGAATGGTAGCAGTAGTGTGTATTGCATGGGATACAACGTTGGTATGAGTCTAAGTGGCGTGAATAACGTTAACTCCATTGGTGGTGGTTTCAACGTTCTAACTACTGGGTTAAAAGATAATATTTTTGGTAATATACCAACTTCATCCAGTACTAAAATAAGAATGAACTACTGCGGAACTGTAATTTTTGAACCTGGATTGACGTCCCTATATAAAGCACATGGTGTTTATACTGATTATTATTACAGTCCAGCGTGGAATGCTGGTGAAGTATCAGAGTTTACATATGAAGACATTGGTATTAGAATAAAAGATGCTATGTATGTCGGAGGAACTCTAGGGTTTACAACATATGGTTTATTAGTTATTAGTACTGAAGGTAAATTATACTGGAGGGGTATATATAACGGAACACAATATAGCACCTTAACTGAAATACCTTTACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1aa8f681e78c13820074f8a17321e4f5d908326c9a540cf44efa725d363841c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7140
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank