Protein

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Genbank accession
WPK33925.1 [GenBank]
Protein name
tail connector protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MEKFMAKFGQGYVQTPFLSESNSVRFKLSIAGSCPLSTSPAYIKFQDNPLGSQVFSVGLNVCVINPTTGAVVESKSYNFSTENDATSSAFVTFMDTYASNFIFALVTNAKTNFPPEVLAWFTKAGSSAIPLAQQVLNIVDISYSAFYISGKNAIALEHIKYSNKKTSTDYSTPLDVVYDTIDDIGATGFPSRTYESTDTFLSAVGGTNNEIKRMPTTSLITPLAGYKLKPGDFLYMKFQLMADADLLAQGTTRLSIRFFKSPSTSPISSKDTNFDGAAGEWKIYEDYIEIPAGADGFTIYCYRTAPVGQGGLRNIIFTEVSCNGSVSKPAEFGINGIRVNYVSESLNTPDIMTLPTQSSTDTGKVFGQEFKEASE
Physico‐chemical
properties
protein length:375 AA
molecular weight: 40738,35770 Da
isoelectric point:4,99208
aromaticity:0,12000
hydropathy:-0,10400

Domains

Domains [InterPro]
DC_0912
STR
1–375
DC_0912
PS52031
LEC
22–193
PS52031
IPR039477
STR
58–129
IPR039477
WPK33925.1
1 375
Architecture
STR
STR 1-375
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK33925.1
1 375
Domain Start End Length (AA) Confidence
N-terminal 1 175 175 0,1886
Central domain 176 364 190 0,4622
C-terminal 365 375 10 0,6491
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-175
Central
176-364
C-terminal
365-375

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV110
[NCBI] 		3077255 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK33925.1 [NCBI]
Genbank nucleotide accession
OR352940 [NCBI]
CDS location
range 57337 -> 58464
strand +
CDS
ATGGAAAAATTTATGGCTAAGTTTGGACAAGGATACGTCCAAACGCCATTTTTATCGGAAAGCAATTCAGTACGATTTAAATTAAGCATAGCGGGCTCTTGCCCGCTATCAACATCTCCTGCTTATATTAAGTTCCAGGATAATCCACTTGGGTCCCAGGTTTTTTCCGTTGGATTAAACGTTTGTGTAATAAATCCTACAACAGGTGCAGTAGTTGAATCTAAGTCATATAATTTCTCTACTGAAAACGACGCCACGTCAAGTGCATTTGTTACTTTCATGGACACATATGCTTCAAATTTTATATTTGCTCTTGTTACTAACGCTAAAACAAACTTTCCTCCTGAAGTTCTCGCATGGTTTACTAAAGCTGGGAGTTCTGCTATTCCATTAGCTCAACAAGTTTTAAATATAGTGGACATTTCTTATTCTGCATTTTATATTTCTGGTAAGAATGCTATAGCACTAGAACATATTAAGTATAGTAATAAGAAAACTTCAACCGACTATAGTACACCACTTGATGTTGTGTACGACACGATCGATGATATTGGTGCTACCGGCTTCCCTAGTCGTACGTACGAATCGACAGACACATTTTTATCTGCTGTTGGAGGTACTAATAACGAAATTAAAAGGATGCCTACAACATCCCTTATTACACCTCTCGCTGGGTATAAATTGAAGCCTGGAGATTTCCTTTATATGAAATTCCAACTAATGGCAGATGCTGATTTGTTAGCACAAGGGACGACACGACTTTCTATTCGTTTCTTTAAATCTCCTTCTACTTCACCTATTTCATCTAAGGATACAAACTTTGATGGGGCTGCAGGTGAATGGAAGATATATGAAGACTACATAGAAATTCCTGCCGGTGCTGACGGATTCACGATTTATTGTTATCGTACGGCCCCAGTCGGGCAAGGCGGATTAAGAAACATTATATTCACTGAAGTATCATGTAATGGAAGCGTTTCAAAACCTGCTGAGTTTGGTATAAATGGTATTCGTGTAAATTATGTTTCAGAATCTTTAAATACTCCAGACATAATGACACTACCTACTCAATCTTCAACTGATACTGGTAAGGTATTTGGACAAGAATTTAAAGAAGCATCAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
086f00229b9e76226a20198d928022eb4f1358143f31ac3bcf25017652f04833
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6672
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank