Protein

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Genbank accession
XPK42232.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGVAGAVNLTDKYLQKSDAEATYQTKAEGATKQYVTDAINPIMTNALFKDDPFVNNDTPIRSGGGNGVESVDMIKVTPENSIKLGSYASSVQGVEIHSAGRVQVVDQNDGGVETKYPIYSKRFRPEIEDLPFAAIGSYVKDSQGRTVGVTRTGINSDIKQLTQKVTFTQPVTVPDAVGDYDAVTLRQLRNSGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVPSDGQLLNRADYPDLWAYAQLLTPISDSLWVGDITQRGRYSTGDGTTTFRVPDRNGIQLNSLAALYGRGDGGASAANGMVFDSAAPNIYGDIGGVVAYGQTGAIMRGQEETALAPQPVTGNGVLRVSLDASKSSPIYGRSNSEIMGRNFVGVWTIRAHGGFTAANTSWSVINSDANRPAGGTRATSGSVVAEYKIGSEVEASTTLQTDAYIDGAYYGIINVYNKTKGVTKQLAFDDSGTLNSDRYAARFGTMMAWSQTGSRRGTFSTDNQGIGANYSFNSILSASQASQGGYKTTTHVGMIHNDAGTFADSCWHVAGDEDNKYGCRLTLRPNRNELFYYTWQPGASGVYTLAMNPVSDERLKHNIQDLSPDEAIRAIKGLDFKSFVYNNDEQGRTRRGVIAQQAEKVEPLYVKTRRFHDNDGVEQEQKELDSAPMLLDTMQVVQDLLKRIEVLEAKLAEK
Physico‐chemical
properties
protein length:714 AA
molecular weight: 77076,85650 Da
isoelectric point:5,48919
aromaticity:0,08123
hydropathy:-0,38936

Domains

Domains [InterPro]
DC_1514
STR
20–329
DC_1514 DC_1985
IPR036388
RBD
603–662
IPR036388
IPR030392
CHP
611–711
IPR030392
IPR030392
CHP
611–663
IPR030392
XPK42232.1
1 714
Architecture
STR
RBD
STR 20-329 | RBD 430-714
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK42232.1
1 714
Domain Start End Length (AA) Confidence
N-terminal 1 74 74 0,9602
Central domain 75 273 200 0,4238
C-terminal 274 714 440 0,9692
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-74
Central
75-273
C-terminal
274-714

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ManiMatter_Bas94
[NCBI] 		3398424 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK42232.1 [NCBI]
Genbank nucleotide accession
PQ850617.1 [NCBI]
CDS location
range 10353 -> 12497
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGGATAATGATGCCTCATGTGGTAGTTACTAGAGATGCCGCAGTTGTGGGTGTGTCTACAGTTGATGGCGTGGCAGGTGCTGTTAATTTAACAGATAAATATCTACAAAAGTCTGATGCTGAAGCAACATATCAAACGAAAGCAGAAGGGGCTACTAAGCAATATGTAACCGATGCTATTAACCCTATTATGACAAATGCTCTGTTTAAAGATGACCCTTTTGTCAATAATGATACACCTATCCGCTCTGGTGGTGGTAATGGTGTTGAATCAGTGGATATGATTAAAGTTACCCCCGAGAACTCTATCAAACTAGGGAGTTATGCTTCTTCTGTTCAGGGGGTTGAGATTCACTCTGCTGGTCGTGTTCAGGTTGTTGATCAGAATGATGGTGGGGTAGAAACTAAATACCCTATCTATTCTAAGCGTTTCCGTCCTGAGATTGAAGATTTACCTTTTGCTGCAATCGGTTCTTATGTTAAGGATTCTCAAGGTCGTACTGTTGGTGTAACCCGTACTGGTATTAACTCTGATATCAAACAACTCACACAGAAGGTGACTTTCACTCAACCAGTTACTGTTCCTGATGCGGTTGGTGACTATGATGCAGTTACTTTGAGACAGCTTCGTAACAGTGGTGGCTCTGGCGGTCCTACCATGAGTGGTATCTCTAACTTTGGTATTGGTGATTTCCACTTACGTGATAGTCGAGCTTTCATCCCAGCTTTTGAAGTTCCCTCAGATGGTCAGCTTTTAAATCGTGCTGATTATCCTGACCTGTGGGCTTATGCTCAACTATTAACCCCTATTAGTGATTCTCTTTGGGTAGGAGATATTACCCAAAGAGGTAGATACTCCACAGGCGATGGCACCACCACTTTCCGTGTCCCTGACCGAAATGGTATTCAGCTTAACTCCCTTGCAGCTCTTTATGGACGAGGTGATGGGGGTGCTTCCGCAGCTAATGGTATGGTTTTTGACTCTGCCGCTCCTAACATCTACGGTGACATTGGTGGTGTTGTAGCCTATGGTCAGACTGGTGCTATTATGCGAGGTCAGGAAGAAACTGCACTAGCTCCACAACCAGTTACAGGAAACGGTGTATTAAGGGTAAGCTTGGATGCTTCCAAATCAAGTCCGATATACGGTCGCAGTAACTCAGAAATCATGGGTCGTAACTTTGTAGGTGTTTGGACTATTCGTGCTCATGGTGGTTTTACTGCTGCTAACACATCTTGGTCAGTTATTAATAGTGATGCAAACCGTCCTGCTGGTGGAACTCGAGCAACTAGTGGTTCTGTTGTTGCTGAATATAAAATAGGTTCAGAAGTAGAAGCCTCTACTACGCTCCAAACTGATGCTTATATCGACGGAGCTTATTATGGGATTATCAATGTTTATAATAAAACCAAAGGAGTTACCAAGCAATTAGCTTTTGATGATTCTGGAACCCTGAACTCTGATAGGTATGCTGCTCGGTTTGGGACAATGATGGCTTGGAGCCAAACAGGAAGTCGCAGAGGGACGTTTTCTACAGACAACCAAGGGATCGGTGCTAACTACTCTTTTAACTCTATACTGAGTGCTTCCCAAGCATCCCAAGGTGGATACAAAACTACTACCCATGTAGGGATGATTCACAACGATGCTGGAACTTTTGCTGATTCTTGTTGGCACGTAGCTGGGGATGAAGACAACAAATATGGTTGTCGTTTAACTCTTCGACCAAACAGAAATGAGCTTTTCTATTACACTTGGCAGCCTGGCGCATCAGGAGTTTACACTCTTGCTATGAATCCTGTGTCAGATGAAAGGTTGAAACACAACATTCAAGATCTCTCGCCTGATGAAGCAATTCGTGCGATTAAAGGTTTGGATTTCAAATCGTTTGTATATAACAACGACGAACAAGGAAGAACTCGTCGTGGTGTTATCGCACAGCAAGCAGAAAAGGTAGAACCTCTTTATGTTAAGACTCGTAGGTTCCATGACAACGACGGCGTAGAGCAAGAACAGAAAGAGCTGGACTCAGCTCCTATGCTCCTCGATACTATGCAAGTTGTTCAAGACCTGTTGAAACGTATTGAAGTTCTAGAAGCGAAGTTAGCAGAGAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e3f7b56494f98da48fa3421fc8aae68c0cc8524d42bb5071f6ed2acdecd8af99
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6049
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank