Protein

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Genbank accession
WPK33105.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVAGGADIDYATNQVTGQTQKTLPAVLRDVGFSPVSWDFSTGGTLTVDDRDKVVYDPVSKTWYSYAGTLPVVVPASFNPVGNANWKPQTDPDLRSDLETMWADGSFPEAVRYKYGLPTVVDGAVYRTVQDKLDDFVNVRDFGAVGDGSTDDSVAFQKAINTGRAVMVPAGIYRIQNVSAPKVVLFAEVPGSVEIQPVNPASTDPSACLYIRGTSESALSGQNYISGITFSSPFAAEGETPFLLFCEFIEYSTFENLLFYRGTFRLYNQRYVNFYNSRLYNALLYVDQNKSGIDAAVGLHIDRLFAAYTSKVEIRNCTDTRITNTYITNPDLALLVEFDTDFFNSGGSKPFCGVLKTSNIIVEGRSVLRCLALSTITGSWFGAFSGTGVKFEDCYGLTFTGSTSHYCNGGSAMELNRVYDSSFVSSSFTNASNDGVTMDNCTNIQFVGCNVGTFELYE
Physico‐chemical
properties
protein length:490 AA
molecular weight: 53209,75000 Da
isoelectric point:4,63308
aromaticity:0,12041
hydropathy:-0,07694

Domains

Domains [InterPro]
DC_1953
STR
1–487
DC_1953
G3DSA:2.10.10.80
ATT
65–129
G3DSA:2.10.10.80 IPR012334
IPR011050
STR
167–361
IPR011050
IPR024535
ENZ
168–209
IPR024535
WPK33105.1
1 490
Architecture
STR
ATT
STR
STR 1-64 | ATT 65-129 | STR 130-487 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK33105.1
1 490
Domain Start End Length (AA) Confidence
N-terminal 1 184 184 0,9915
Central domain 185 479 296 0,9978
C-terminal 480 490 10 0,0734
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-184
Central
185-479
C-terminal
480-490

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV104
[NCBI] 		3077250 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK33105.1 [NCBI]
Genbank nucleotide accession
OR352935.1 [NCBI]
CDS location
range 21781 -> 23253
strand +
CDS
ATGTCAAGCGGATGCGGTGACGTTTTAAGCCTGGCGGATTTACAAACCGCCAAGAAACACCAGATTTTCGAAGCAGAGGTTATCACGGGCAAATCCGGCGGCGTTGCTGGCGGCGCTGATATTGATTACGCGACCAACCAGGTAACCGGGCAGACGCAGAAGACGCTCCCTGCCGTGTTGCGTGACGTGGGCTTTTCTCCGGTGTCGTGGGATTTCTCCACAGGCGGCACGTTAACTGTTGACGACCGTGACAAAGTTGTCTATGACCCCGTAAGTAAAACGTGGTATTCGTACGCGGGTACGTTGCCTGTTGTGGTTCCTGCATCCTTTAACCCGGTTGGTAACGCTAACTGGAAGCCGCAGACTGACCCTGACTTACGTTCGGATTTAGAAACAATGTGGGCAGACGGCAGTTTCCCGGAAGCCGTTAGATATAAATACGGACTGCCAACTGTCGTTGACGGCGCGGTATACAGAACTGTTCAGGATAAGTTGGATGATTTTGTAAACGTTCGAGATTTCGGGGCTGTTGGTGATGGCTCTACCGACGACTCCGTAGCTTTCCAGAAGGCCATAAATACTGGACGTGCCGTAATGGTCCCTGCGGGGATTTACCGTATACAGAACGTAAGTGCCCCGAAGGTAGTGCTGTTTGCCGAAGTTCCTGGTTCAGTAGAAATACAGCCCGTGAACCCGGCTAGCACGGACCCTAGCGCGTGCCTTTACATCCGTGGTACATCCGAATCCGCCCTTTCGGGTCAAAACTATATCAGCGGAATTACATTCTCTTCCCCATTCGCAGCAGAAGGGGAAACCCCATTCCTTTTGTTTTGTGAGTTCATTGAATACAGTACTTTCGAAAACCTTCTCTTCTACCGGGGGACATTCCGCCTATACAACCAACGGTATGTAAACTTTTATAACTCGCGATTGTACAACGCTCTGCTGTACGTAGACCAGAACAAATCGGGGATTGATGCAGCGGTAGGGTTGCATATCGACAGGCTGTTCGCGGCATATACTAGCAAAGTAGAAATTAGAAACTGCACAGACACTCGCATCACCAATACCTATATTACTAACCCTGATTTAGCTTTATTGGTCGAGTTCGATACTGACTTCTTCAACTCCGGGGGTAGTAAGCCTTTTTGTGGTGTTTTAAAAACATCTAATATCATTGTTGAAGGGAGGTCTGTATTACGCTGCCTGGCTTTGAGTACGATTACAGGATCCTGGTTTGGTGCTTTTTCTGGCACTGGTGTTAAGTTTGAAGATTGCTACGGATTAACATTCACAGGTAGTACCAGCCATTACTGTAACGGTGGTTCTGCTATGGAACTAAACCGTGTCTATGATAGTTCTTTCGTCTCATCATCTTTCACCAATGCTTCTAATGATGGGGTAACAATGGATAACTGTACTAACATTCAGTTTGTTGGCTGCAATGTCGGAACATTTGAACTTTACGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
cf29e392dd0454d1733db2d5c17a049f88546ca5e4c88bc0b19cf744c37f3353
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8432
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank