Protein

View in Explore
Genbank accession
ATS92201.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MADLGAIGASYAVGSLRALGWPPVIRAYPGPSRLPTNMPGWHVQSATQFYGGPQVQPGTPSWYGPPRPPGTDPMALYGIGGTVKQRLNGVDSPLVGCLVRLYARQSGVLAGTAISGLDGSFEIDNLLPSVAGFFAVAFDPEGAPVQNALIFDRLKALPLVPGEIKDLDLSFSTSGTASYHLSTVYIEGAVTYAVTSGALPDGIVLNTSTGAITGKPLTAGPYSFTITAVGSVYGTGHRAWSGEVTSGLAYLKTLQGSASLALVRSGQQDEGFIVLPALPFPFSLFGSSYQNNIYACANSFITFGFGVSVYSSLSPTNPGRGLLLAAADRSWQTLHAGSVLSGQGFLVRFDGSTGYASYDGGNLWEVTFYVDGTIGVVTGNFPTGGVTNISDGTSWRSDGAAPVFMSNKAYLGTPTGTGGNYVWEENP
Physico‐chemical
properties
protein length:427 AA
molecular weight: 44320,22590 Da
isoelectric point:5,18721
aromaticity:0,11241
hydropathy:0,11358

Domains

Domains [InterPro]
DC_0374
STR
1–160
DC_0374 IPR013783 DC_0792
DC_2153
STR
153–245
DC_2153
IPR015919
STR
180–232
IPR015919
PF05345
RBD
180–229
PF05345
ATS92201.1
1 427
Architecture
STR
RBD
STR 1-245 | RBD 246-427
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATS92201.1
1 427
Domain Start End Length (AA) Confidence
N-terminal 1 378 378 0,7804
Central domain 379 416 39 0,3655
C-terminal 417 427 10 0,6532
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-378
Central
379-416
C-terminal
417-427

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage DLP4
[NCBI] 		2047758 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATS92201.1 [NCBI]
Genbank nucleotide accession
MG018224.1 [NCBI]
CDS location
range 8263 -> 9546
strand +
CDS
GTGGCCGACCTTGGCGCCATTGGCGCGTCCTACGCGGTAGGCAGCCTGCGCGCCTTGGGATGGCCTCCCGTAATCCGGGCCTACCCGGGGCCGAGCCGGCTTCCGACCAACATGCCTGGGTGGCACGTGCAGTCTGCCACCCAGTTCTATGGCGGCCCGCAGGTGCAGCCCGGCACTCCCTCGTGGTACGGCCCGCCGAGGCCGCCCGGTACTGACCCAATGGCCCTGTACGGCATTGGTGGCACGGTCAAGCAGCGGCTGAACGGCGTGGATAGCCCCCTCGTCGGCTGCCTGGTCCGCCTGTATGCCAGGCAGTCCGGGGTACTTGCCGGCACCGCAATTTCAGGCCTTGATGGGTCTTTCGAGATAGACAACCTGCTGCCAAGCGTTGCCGGTTTCTTTGCCGTCGCTTTTGATCCTGAGGGCGCGCCGGTGCAGAACGCCCTCATCTTTGACAGGTTGAAGGCCCTGCCGCTGGTGCCCGGCGAGATAAAGGACCTGGACCTGTCGTTCAGCACGTCCGGCACGGCGTCCTACCACCTGTCAACCGTCTATATCGAAGGTGCTGTGACCTATGCCGTCACCTCCGGGGCTCTGCCTGATGGCATCGTGCTCAACACCTCCACCGGTGCCATCACTGGTAAGCCTCTGACGGCTGGGCCCTACTCCTTCACCATCACGGCTGTGGGATCGGTGTACGGCACGGGTCACCGGGCCTGGTCTGGCGAAGTTACGTCCGGCCTGGCATACCTGAAGACACTGCAGGGGTCCGCAAGCTTGGCGTTGGTGCGCTCCGGTCAACAGGACGAAGGGTTCATTGTACTCCCCGCCCTGCCTTTCCCCTTCAGCCTGTTTGGCTCTTCCTACCAGAACAACATATACGCCTGTGCCAACAGTTTCATTACCTTCGGCTTCGGCGTCTCGGTCTACTCCAGCTTGTCACCCACCAACCCTGGACGAGGCCTGCTGCTAGCCGCCGCAGACCGTTCCTGGCAGACACTGCATGCCGGGTCAGTGTTGTCCGGGCAGGGCTTCCTGGTGCGGTTCGATGGCTCAACCGGCTACGCCAGTTACGACGGCGGCAACCTGTGGGAGGTGACGTTCTACGTGGACGGCACCATCGGCGTAGTCACCGGCAATTTCCCCACCGGCGGCGTAACCAATATATCGGATGGCACCAGCTGGCGTAGCGATGGTGCGGCCCCGGTGTTCATGTCGAACAAGGCATACCTTGGCACGCCCACCGGCACCGGCGGCAACTACGTCTGGGAGGAGAACCCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce3ea1e3868032c63bc6eb4480a7936c436240de0b05ea11df288db373a5b70f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6755
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lysogenic conversion of Stenotrophomonas maltophilia by temperate phage DLP4 Dennis,J. and Stothard,P. 2019-04-16 — GenBank