Protein

View in Explore
Genbank accession
YP_009784709.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGRVTGSWERPIQGVSQQADKDRMDGQCTLQENFIPSPLSGLIKRVGTRHINKLMDSVSDKALWYSYNRGDDEAYIVLIEPDGDRPRVFDMAGNERIVNVNGGNEHYYRDPNPAQNLRLSTIADYTFLLNTTTTVKSKPDKTPKNPNMAIVYCQYATYARDYEVHVDGTKIAGYTTPLGDDPSHASYVKTNYIASTLASQINGVKFGSYTGNITWHSSSQGSGYGTLTIDRTPSKVNNCYNETTKRKVTPTVVSGSTLHFSSSSVSEGDTVRVEYEYKSTTDFSAELHGNAVYVKKKSGATFNISTIDSADGNDLVAVQDNVKQLTNLPPYAPDGYVVKVNNKEGYEANSYWLKAVSSSDTDQAGSRVSWEETTAQDTEYMLDNNTLPHTLISEADGTFTFDRGDWESRRVGNEKTNPFPSFVDKKINSIGTFQNRMLFTSGESAVFSRTNNFFDFFRETTQTESQSDPIDAFADADEINNLMHHAVLDGDIIFFAENGQFLIQGSKPITKDSLVFKKVTSYPLNIKARPAVTGESIMFSFIAGNYAGIREMFTDSFTDTKRARPITEHVAEYIKGVPIDLISSPNINTLFVRTNDDSKTLYVYDWLWAGDQKVQSAMHKWVLGGDVLFARFIRDNAYFVIKRGNGVYLEDLPISSDEDDNGLDFPVRLDRRAVVDATWDGSRWVMSLPFVPSSDDSLVFVRGEGCWKEDRGTSVIFEKEGDKYVTYDDLADTLQVQRCKLTVGVTFKSRFIPTKPYLKDANGRAIGLDRFTLGKVWLNYDSIGNTTVTVNDQASKRKWKYEYNGRLMGGWNNRVGFAPLDGGAFQFPVRLQAKQANFEIVTEDYRPFILRDMEWEGMFKQRGRRL
Physico‐chemical
properties
protein length:866 AA
molecular weight: 97399,41020 Da
isoelectric point:5,54234
aromaticity:0,11316
hydropathy:-0,52263

Domains

Domains [InterPro]
IPR058003
TTP
1–209
IPR058003 IPR058003
DC_0173
ATT
1–283
DC_0173
YP_009784709.1
1 866
Architecture
ATT
TTP
ATT 1-283 | TTP 284-865 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009784709.1
1 866
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,9924
Central domain 135 343 210 0,6536
C-terminal 344 866 522 0,2254
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-343
C-terminal
344-866

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vc1
[NCBI] 		1480731 Uroviricota > Caudoviricetes > Drexlerviridae > Jhansiroadvirus gwaliVC1 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784709.1 [NCBI]
Genbank nucleotide accession
NC_047746 [NCBI]
CDS location
range 6265 -> 8865
strand +
CDS
ATGGGAAGGGTAACTGGTAGCTGGGAACGCCCTATTCAGGGTGTATCTCAGCAAGCAGACAAAGACAGGATGGATGGACAGTGTACTCTTCAAGAGAACTTTATCCCATCTCCACTGTCTGGTCTTATTAAGCGTGTTGGTACTCGCCACATCAACAAGCTAATGGATTCCGTATCAGACAAAGCTCTGTGGTATTCATACAACCGTGGTGATGATGAGGCTTATATTGTACTCATCGAGCCTGATGGCGATAGACCTCGTGTGTTCGATATGGCAGGTAATGAGCGGATTGTTAACGTTAATGGAGGTAATGAACATTACTACCGAGACCCTAATCCTGCACAGAACCTCCGACTGAGTACAATAGCTGACTACACGTTCCTGTTGAATACAACTACTACAGTCAAGTCAAAGCCAGACAAGACACCGAAGAACCCGAACATGGCTATTGTGTACTGCCAGTATGCAACCTATGCCCGTGACTATGAAGTGCATGTAGATGGTACTAAGATTGCTGGGTATACTACACCTCTTGGTGATGACCCTTCACACGCATCCTACGTGAAGACTAACTACATAGCATCTACACTTGCATCCCAGATTAACGGTGTTAAGTTCGGCAGTTACACTGGTAACATTACGTGGCACTCTTCATCTCAAGGTTCCGGTTATGGTACACTTACGATAGATAGGACACCAAGCAAAGTAAACAACTGCTACAATGAAACTACTAAGCGCAAGGTAACACCTACTGTTGTAAGTGGTAGTACTCTACACTTCTCAAGCAGCTCTGTTAGTGAGGGGGACACTGTGCGTGTTGAGTATGAGTACAAATCAACTACTGACTTCAGTGCAGAGTTACATGGTAATGCGGTATACGTTAAGAAGAAATCAGGCGCTACGTTCAACATATCTACTATTGATAGTGCAGATGGTAATGACTTAGTTGCTGTGCAGGATAATGTAAAGCAGCTAACAAACTTACCGCCTTACGCCCCTGATGGCTATGTCGTTAAGGTGAACAACAAGGAAGGCTATGAGGCTAACTCATATTGGCTAAAGGCTGTGTCTAGTTCTGATACTGACCAAGCTGGCTCTAGAGTTTCTTGGGAAGAGACAACTGCTCAAGACACAGAGTACATGCTGGATAATAACACACTCCCTCATACGTTGATAAGCGAGGCTGATGGTACTTTCACATTTGACCGTGGTGACTGGGAGAGTCGAAGGGTAGGTAACGAGAAAACCAACCCTTTCCCATCATTCGTAGATAAGAAGATTAACAGCATTGGTACATTCCAGAACCGTATGCTATTTACTTCAGGTGAGTCTGCTGTCTTCAGTCGTACTAATAACTTCTTTGATTTCTTCAGAGAGACAACTCAAACAGAGTCACAGTCTGACCCTATTGATGCGTTCGCTGATGCTGATGAGATTAACAACCTGATGCACCACGCTGTGCTTGATGGTGATATTATCTTCTTTGCAGAGAATGGACAGTTCCTTATCCAAGGCTCTAAGCCAATAACTAAGGATAGCCTAGTGTTCAAGAAGGTGACTTCGTACCCTCTGAATATCAAAGCTCGTCCAGCAGTTACTGGTGAGAGTATTATGTTCTCTTTCATTGCTGGTAATTATGCTGGTATCCGAGAGATGTTTACTGACTCATTCACCGATACCAAGAGAGCACGTCCTATCACTGAGCACGTTGCTGAGTACATCAAAGGTGTACCTATTGACCTTATCTCAAGCCCTAACATCAACACGCTGTTCGTAAGAACTAACGATGACAGCAAGACATTGTACGTGTATGATTGGTTATGGGCTGGCGACCAGAAGGTGCAGTCAGCTATGCACAAGTGGGTGCTTGGTGGTGATGTTCTGTTTGCAAGATTCATACGTGATAATGCTTACTTCGTTATTAAGAGAGGTAATGGTGTCTACCTAGAAGATTTACCTATCAGCAGTGATGAGGACGACAATGGTCTTGATTTCCCAGTACGGTTAGACAGACGTGCGGTAGTTGATGCTACATGGGATGGCTCTCGTTGGGTTATGTCATTACCCTTTGTACCTTCAAGCGATGACTCTTTAGTCTTTGTACGTGGAGAGGGTTGCTGGAAAGAGGACAGAGGTACTAGTGTTATCTTTGAGAAAGAGGGCGATAAGTATGTTACCTATGATGACTTGGCTGATACGCTACAGGTACAGAGGTGTAAGCTTACTGTAGGTGTTACTTTTAAGTCTAGGTTCATACCGACTAAGCCTTACCTCAAAGATGCTAACGGTAGAGCTATCGGTCTTGATAGGTTCACTCTTGGTAAGGTCTGGTTGAACTATGACAGCATTGGTAATACAACCGTGACTGTTAATGACCAAGCATCAAAGCGTAAATGGAAGTACGAGTACAACGGTCGTCTTATGGGTGGCTGGAATAACCGTGTTGGCTTTGCTCCTTTAGATGGTGGAGCTTTCCAGTTCCCTGTGAGACTACAGGCTAAGCAAGCTAACTTTGAAATAGTAACAGAGGACTACCGACCTTTCATTCTTCGTGATATGGAATGGGAAGGTATGTTCAAGCAACGAGGAAGGAGGTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
064fbf883c7b9044b42fe6c2799a5681b441c14681c3ac080f37b0971958b9a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8975
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of the phage of Vibrio sp. which is highly homologous to Vibro cyclitrophicus was sequenced and analyzed Li,Z., Xu,Y. and Zhang,J. 2018-01-16 — GenBank