Protein

View in Explore
Genbank accession
XDQ99021.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,56
TF
Evidence RBPdetect2
Probability 0,63
Protein sequence
MVAKSFRARSGLDAAGEKVINVGKADRNTLSDGVNVDFFNEFNGIQQYDPTRGYSQDMAIIYARRIWYAKQNIASPAGAFDESKWIATRNDPKWVYSNVTTPDGSIIESGSYIMADGRFTELLYLLPDNPTEGDVITFKDCGGLVGVNSILVKSNTRQIRLRTVQSAQYRLTHPYMIATFIYNGNVWRVAETLDNRDSEIVNATGTGSFQLQSGMTVFRNSATGKITLQLPKYANDGDVITTYDADKMNSINVAVLQIYPGSGHTISDGAITGVTSVTSQKSGFGMFIFDAQNSQWKVYDADNRVRLRRIYSDLNTVPNDYVFVTANPSGTIPNVTVTLPTDVADGDRVYVSLYMMGKNQNCTIKVKDGTTDKIRTNKNMMQFPQRKDYPPDDWFSVTSLAFNAASDYLPYIEFSYMKATKEWVVANYRPIVERVDATNRSRTGVIALAAQAEVNKNLEDNPNDETAITPMTLANKTATETRRGIARLATTAEVNKLSTDTYLDDVIVTPKKLNERTATETRRGLAEIATQAETNGSTDDITIVTPKKLHNRIASPTLTGILALVATGGAPNTNTDRSQAGTGVYDHSDYQKAVTPKTLREYKATQLQSGVVWLASETEVINGTVASSNVPTVVTPEMLHKKTSTDGRIGLIEIATQTETNAGTDYTRAVTPKTLNDRAATETLTGIIAIATTAEVSAGTVTNKAIVPSKLKGYLDDTSHITVATADGLTQSGTIWTTVNIGIQSATETQRGTLRVATQSETNAGTLDTVFVTPKKLHAKKATESAEGIIQVATAAETTAGTVANKAVSPKNLKNTIQVDTSWQATDLVRGTVKLSKGLGTWSGNDVAGSTLPDDGYAAVGVAVSPYELNLTLKHYLPIGAKAVDADKLDNLDSSQFIRRDIDQTVNGALTLTKETTVQANINSTADASFRVMNVSGDLNVGDGSSMGKLRLNGGSSNDWSIQASSSSGRIAMISTGNTGTVHLSVYNDTRGVVANVKFQAPEIQAIGKVTLGNDTVITAAGSVLSMGTNNKTTKILTSDAGNILAEESGNSYKVFTEKNAQTLLNPTYVRKAGDTMSGRLTVSNSSIIIAGQAAWSTLDAVTEASRGNWTAEITASAQYNLLPGYAVPVLEPDPINPEIMIVTRYTYVKAPGTLTQFGNGTAFTYQIWAPRPTSGTGVDALAQSFWIRQMNPITGKFDGWGRMYTSNNPPTAGEIGATSAVGTTVKNMTVTDWIKVGNVKIYPDPVTQTVKFEWVA
Physico‐chemical
properties
protein length:1257 AA
molecular weight: 135384,15470 Da
isoelectric point:6,27061
aromaticity:0,07080
hydropathy:-0,27757

Domains

Domains [InterPro]
DC_1946
ATT
1–200
DC_1946 DC_1209
IPR048391
ATT
1103–1205
IPR048391
XDQ99021.1
1 1257
Architecture
ATT
STR
ATT
STR
ATT 1-200 | STR 347-1102 | ATT 1103-1205 | STR 1206-1242 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDQ99021.1
1 1257
Domain Start End Length (AA) Confidence
N-terminal 1 829 829 0,8050
Central domain 830 1050 222 0,2619
C-terminal 1051 1257 206 0,7297
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-829
Central
830-1050
C-terminal
1051-1257

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KM5a1-KLB3
[NCBI] 		3129266 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella sp. M5a1
[NCBI] 		2759708 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDQ99021.1 [NCBI]
Genbank nucleotide accession
PP444687 [NCBI]
CDS location
range 9980 -> 13753
strand -
CDS
ATGGTAGCTAAATCATTCCGCGCACGAAGTGGCCTTGATGCTGCTGGTGAAAAAGTTATCAACGTTGGGAAGGCTGATCGTAATACGCTGAGTGACGGCGTTAACGTTGACTTTTTCAATGAATTTAACGGAATCCAGCAGTATGACCCGACCCGTGGCTATTCTCAAGACATGGCGATCATTTATGCGCGTCGTATCTGGTACGCAAAACAGAATATTGCTTCCCCTGCTGGGGCTTTCGACGAATCCAAATGGATCGCAACTCGTAATGACCCGAAATGGGTTTATAGTAACGTAACCACTCCAGACGGTAGCATTATTGAATCTGGTAGTTACATTATGGCTGATGGACGCTTTACTGAACTTCTGTACCTGCTGCCGGACAACCCGACAGAGGGCGACGTAATCACGTTTAAAGATTGCGGTGGTTTAGTAGGTGTGAACAGTATCCTTGTTAAGTCTAACACCCGTCAGATCCGTTTACGTACTGTACAATCAGCACAGTATCGACTGACCCACCCGTACATGATCGCAACGTTTATCTATAACGGTAACGTATGGCGTGTTGCTGAAACTCTGGATAACCGCGATTCTGAGATCGTGAACGCAACCGGAACAGGTTCATTCCAGTTACAATCTGGCATGACAGTTTTCCGTAACAGTGCTACAGGTAAAATCACTCTCCAGTTGCCGAAATATGCAAATGATGGTGATGTGATCACAACCTATGACGCTGATAAAATGAACTCTATCAACGTAGCCGTTTTGCAGATTTATCCAGGTAGTGGACACACTATTTCTGACGGTGCAATTACTGGTGTTACTTCGGTAACTAGCCAGAAATCTGGCTTTGGTATGTTCATCTTTGATGCACAGAATAGCCAATGGAAAGTATATGATGCTGATAATCGTGTTCGTCTGCGTCGTATCTATAGTGATTTAAACACAGTTCCTAACGATTACGTTTTTGTTACTGCAAACCCTTCTGGGACTATACCAAACGTTACAGTTACCCTTCCAACTGATGTTGCTGATGGTGATCGCGTTTACGTATCCCTTTATATGATGGGTAAAAACCAGAACTGTACAATCAAAGTTAAAGATGGTACAACGGACAAGATCCGCACCAACAAAAATATGATGCAGTTCCCGCAGCGCAAAGACTATCCGCCTGATGATTGGTTTAGTGTAACTTCATTAGCATTTAATGCTGCTAGTGATTACCTCCCGTATATCGAGTTTTCTTACATGAAAGCTACGAAAGAATGGGTTGTTGCTAATTATCGTCCGATCGTTGAACGTGTTGACGCAACTAACAGATCGCGTACTGGTGTTATTGCTCTGGCTGCACAGGCAGAAGTAAACAAAAACTTGGAAGACAACCCGAACGACGAAACTGCTATTACTCCGATGACGTTAGCAAATAAAACTGCTACAGAAACCCGTCGTGGTATTGCACGGTTAGCAACAACTGCTGAGGTTAACAAACTTTCAACCGATACCTATCTGGATGATGTGATTGTTACCCCTAAGAAGCTGAACGAAAGAACAGCAACTGAAACCCGTCGTGGACTGGCAGAAATCGCAACTCAGGCAGAAACCAACGGAAGCACCGATGATATTACTATTGTAACCCCGAAAAAGTTGCATAACCGTATTGCATCGCCGACCTTGACTGGTATCCTTGCCCTTGTTGCTACTGGTGGTGCTCCTAACACCAACACGGATCGTTCTCAGGCTGGTACTGGGGTTTATGACCATTCAGATTATCAGAAAGCGGTAACGCCTAAAACTCTTCGTGAGTATAAAGCGACTCAGTTACAATCTGGTGTTGTATGGCTGGCTTCTGAAACCGAAGTTATTAACGGTACTGTTGCAAGTTCAAACGTTCCGACCGTTGTTACTCCGGAAATGCTGCACAAGAAAACCTCTACTGATGGTCGTATTGGTTTGATCGAGATTGCTACCCAGACAGAAACCAACGCAGGGACTGATTACACGCGAGCGGTAACGCCTAAAACGCTTAATGATCGTGCTGCAACGGAAACGCTGACAGGTATCATTGCAATTGCAACCACTGCCGAAGTATCAGCAGGTACTGTAACGAATAAAGCGATCGTACCGTCTAAACTGAAAGGTTATCTGGACGATACAAGCCATATTACTGTTGCTACTGCTGATGGGTTAACTCAATCTGGTACTATTTGGACTACGGTTAACATCGGTATTCAATCAGCAACTGAAACTCAACGTGGTACTTTACGCGTTGCTACGCAGTCTGAGACGAACGCAGGGACATTAGATACAGTATTTGTCACCCCTAAGAAGTTACACGCTAAGAAAGCGACTGAGAGCGCAGAAGGTATCATTCAGGTGGCTACGGCTGCTGAAACTACCGCTGGCACCGTTGCAAACAAGGCTGTTTCTCCTAAGAACTTGAAAAATACAATTCAGGTTGATACTTCATGGCAAGCTACCGATCTGGTACGTGGTACTGTGAAGCTGTCTAAGGGGCTTGGTACTTGGTCTGGTAATGATGTGGCTGGTTCTACTCTTCCGGATGATGGTTATGCCGCTGTAGGTGTTGCTGTTTCTCCGTATGAACTGAACTTAACACTGAAACACTATCTACCGATCGGTGCTAAAGCGGTTGATGCTGATAAGCTGGATAATCTGGATTCTTCCCAGTTCATTCGTCGTGATATTGATCAGACGGTTAACGGGGCATTGACTCTAACGAAAGAAACCACTGTACAGGCTAACATTAACTCAACCGCCGACGCGAGTTTCCGGGTAATGAATGTTAGTGGAGATCTGAACGTTGGTGATGGCTCATCGATGGGTAAACTTCGTTTGAATGGCGGTTCATCTAACGACTGGTCAATTCAAGCAAGTTCATCCTCTGGGCGTATTGCAATGATCTCAACGGGTAACACTGGCACAGTTCATCTTTCTGTGTATAATGATACTCGCGGCGTTGTAGCTAACGTTAAATTCCAGGCTCCTGAAATTCAGGCGATTGGCAAAGTGACTCTGGGTAATGATACAGTGATCACGGCTGCTGGTTCTGTTCTCTCTATGGGTACGAACAACAAGACAACTAAGATCCTAACTTCGGACGCTGGTAACATTTTGGCAGAAGAATCAGGGAACTCTTATAAAGTCTTTACTGAGAAGAACGCGCAAACCTTGCTGAATCCTACGTATGTACGTAAAGCAGGTGATACGATGTCTGGGCGCTTGACGGTAAGCAACAGTTCAATTATCATTGCAGGTCAAGCGGCTTGGTCAACGCTGGATGCAGTAACAGAAGCATCCAGGGGCAACTGGACGGCTGAGATCACAGCATCGGCACAATACAACTTGCTTCCTGGTTATGCGGTTCCGGTTCTTGAACCAGATCCGATTAATCCAGAAATCATGATTGTGACCCGTTATACCTATGTTAAAGCACCGGGTACTTTAACGCAGTTTGGTAACGGAACTGCATTCACTTATCAGATTTGGGCACCTCGTCCGACCTCTGGTACTGGTGTTGATGCGCTGGCGCAATCCTTCTGGATCCGTCAAATGAACCCAATCACGGGTAAATTTGATGGTTGGGGCCGCATGTATACTAGCAACAACCCGCCTACTGCTGGTGAGATTGGTGCAACGTCTGCTGTTGGTACTACGGTTAAAAACATGACTGTTACCGATTGGATCAAAGTTGGTAACGTTAAGATTTACCCAGATCCAGTTACTCAGACAGTTAAATTTGAGTGGGTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
51589ab47f6854b189f8f1f0f84e6e74794479ef643f1e019a8599d2a2bf8ccb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2672
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of 24 phages infecting the plant-growth-promoting rhizobacterium Klebsiella sp. M5a1 Gittrich,M.R., Sanderson,C.M. and Sullivan,M.B. 2025-02-21 — GenBank