Protein

View in Explore
UniProt accession
W8JPQ4 [UniProt]
Protein name
Tail spike TSP1/Gp66 N-terminal domain-containing protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNELFSQGGKGSTGILTNKQAVARHFGVKQSEVVYFSVGAVLSGYKVIYDKESQRAYSLPTDLGAGTTAVSLSSSAVLVHSAGSVDLGALAVTREEYVTLPGSFDSGVTVNTKNELVVFTDGKYRWDGAFPKSVPVGSTPASTGGIGLGAWVSIGDASLRSQINNSFSDVVSLRNSKNLLPSIPVQLSNYYASINGGGGQFYVDDSDTTSTDNGGTVFVNLTGQRIKRVLDGVCRWSDFGILPGMPSAPTKSQCEAVWAWGFANGCKRYETFQKGEMTFTFPLLFQIPADWTGGAVSFIAEGLHKFAYDFTNGATDDVVEIILKLEDLSGNTPIHTIYNFDNVGMGRFPGKSIRYTALRHTNAKNSMIKVTGKNNYGYALFIGGSDNSIVYNSTFYNCDGQLLVTSPAGAYDNFGDAIYVGAKNVSIQSPVIETTQGGRAGIVFEGTSVDRVGGEVTNCFIKGYDRGIHIETVGYRMDAVNITGGRIQDCNTSVLAFNGVTADMSSDMSVIIKGLTSRLDSTISGHANPSGFSLGHLMVSGVNTQVTTEGCSWQAHQNNITVVGNGKWVSNGDRMFVNSGGINLPYHRGCEINNMYAPANRSLLNSLGNIIFTNSFWGGDISIGAGNKSIIDNVEMSKLTYPNCGRISLLGSNSAILRNITFQTPDTWAIDNTQTLQVPVCPIIENIHVNSTPTGTATLLRNAENTGTYANRYRRAMPSYISNGSAWDIIS
Physico‐chemical
properties
protein length:731 AA
molecular weight: 78226,71500 Da
isoelectric point:6,14960
aromaticity:0,09439
hydropathy:-0,10739

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–96
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_1490
DC_1348
ATT
1–260
DC_1348 IPR011050
IPR040775
RBD
91–156
IPR040775
W8JPQ4
1 731
Architecture
ATT
STR
ATT 1-260 | STR 261-731
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
W8JPQ4
1 731
Domain Start End Length (AA) Confidence
N-terminal 1 245 245 0,9935
Central domain 246 689 445 0,9890
C-terminal 690 731 41 0,9347
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-245
Central
246-689
C-terminal
690-731

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB-SalM-SJ2
[NCBI] 		1458849 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHK61504.1 [NCBI]
Genbank nucleotide accession
KJ174317 [NCBI]
CDS location
range 113086 -> 115281
strand +
CDS
ATGAACGAACTGTTCTCACAAGGTGGTAAAGGTTCAACCGGAATCTTAACCAACAAGCAAGCAGTAGCTCGTCACTTTGGAGTTAAGCAATCTGAGGTTGTTTACTTCTCAGTGGGTGCTGTATTGAGTGGGTATAAAGTAATCTATGACAAAGAATCGCAGAGAGCTTATTCCTTACCCACTGACCTTGGTGCTGGAACCACGGCGGTCAGCCTTAGTTCTTCGGCTGTGCTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTTACTCGTGAAGAGTATGTAACTTTACCTGGTTCATTTGATTCTGGTGTAACTGTTAATACTAAGAATGAGCTAGTTGTATTCACTGATGGTAAATATCGTTGGGATGGTGCGTTTCCTAAATCCGTTCCTGTTGGCTCAACTCCAGCATCAACTGGCGGCATTGGATTAGGTGCGTGGGTTAGTATTGGTGATGCATCACTAAGATCTCAAATTAATAACTCCTTCTCTGATGTTGTATCGTTAAGGAATTCAAAAAATCTACTTCCCAGCATTCCAGTTCAATTGAGCAATTACTATGCCAGTATAAATGGAGGTGGCGGGCAGTTCTATGTGGATGATTCTGATACCACATCAACGGATAACGGCGGAACAGTTTTCGTAAACTTAACTGGTCAGCGAATTAAGCGTGTCTTAGATGGTGTGTGTCGGTGGTCAGACTTTGGTATACTGCCGGGGATGCCATCTGCGCCTACCAAATCGCAATGTGAGGCGGTATGGGCGTGGGGATTTGCTAACGGATGTAAGCGTTATGAAACCTTCCAGAAAGGTGAAATGACATTCACTTTCCCTCTGCTGTTTCAGATTCCTGCTGACTGGACTGGCGGGGCGGTTAGCTTCATTGCAGAAGGCCTCCATAAGTTTGCGTATGATTTCACCAATGGTGCCACTGATGACGTGGTTGAGATCATCCTAAAACTTGAGGACCTGTCAGGGAATACACCCATTCATACTATTTATAATTTCGATAACGTCGGTATGGGGCGGTTCCCGGGTAAGAGCATCCGATACACCGCTCTACGCCACACGAACGCAAAGAACTCAATGATCAAGGTTACTGGGAAGAACAACTACGGATATGCCCTGTTCATAGGCGGTAGTGATAACAGCATCGTGTACAATTCAACGTTTTATAACTGCGATGGCCAGTTACTTGTAACTTCTCCGGCAGGAGCTTACGACAACTTCGGTGATGCGATTTATGTTGGCGCTAAAAATGTGTCCATCCAGAGCCCTGTCATTGAAACAACACAGGGTGGCAGAGCTGGTATCGTATTCGAAGGGACAAGTGTTGATCGTGTTGGTGGTGAGGTAACAAACTGCTTCATTAAGGGATACGATCGCGGTATTCACATTGAAACCGTTGGCTACAGAATGGATGCGGTTAATATTACTGGAGGCAGGATACAGGATTGTAATACCAGCGTATTGGCATTCAATGGTGTAACCGCTGATATGTCGAGCGACATGTCTGTTATCATTAAGGGGTTAACGTCAAGGCTTGATAGCACAATTTCAGGCCACGCTAATCCGTCTGGTTTTAGCTTGGGCCACCTTATGGTATCTGGAGTTAATACACAAGTAACAACGGAAGGGTGCTCTTGGCAGGCTCATCAGAACAATATCACCGTGGTAGGTAATGGAAAATGGGTGAGCAATGGAGACCGCATGTTTGTAAACTCTGGAGGGATTAATTTACCATACCATCGTGGGTGTGAAATTAATAATATGTACGCCCCTGCAAACAGAAGTTTACTTAATTCGCTTGGTAATATTATATTTACGAATTCATTCTGGGGTGGTGACATTTCTATTGGCGCTGGTAACAAAAGTATTATTGATAATGTTGAAATGTCTAAACTTACATATCCGAACTGTGGTCGCATATCTTTATTGGGTTCCAATAGCGCTATTCTTCGAAATATTACGTTTCAAACTCCGGATACATGGGCGATTGACAACACGCAAACCTTACAGGTGCCTGTGTGCCCTATTATTGAAAATATCCATGTAAATAGCACGCCAACAGGAACGGCAACACTACTTAGAAATGCTGAAAACACAGGGACTTATGCAAACAGGTATCGGCGCGCAATGCCTTCATACATAAGCAATGGTAGCGCCTGGGATATTATAAGCTGA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
a96fee25b16feb3fc64d5321029f39826c1c614ba512ef0f79515563f41238ce
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7910
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50