Protein

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Genbank accession
UPW41925.1 [GenBank]
Protein name
major capsid protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSIFNTVNLPKPFRSKYNLTHERKLSCQMGRLIPFFCEEVLPDDKWSVQSAFRLELAPLIAPLMHNVDVYQYFFYVPNYLLSSAWNTWISQGEPADSPNIPYPCRFILSDDQFRGLDADNLKLFVGPGTLLDYLGFSNENARTGKGYDSSVKGVDLKDYSCFPFLAYNGIWLNYFRNENFEPLPTEWGNPGGYVQGLDQTQNINLSDWKAWNFYYRNNVVAPIIYYLNPLDDDDFGGASGDAINTSRFLPHIKPRKANFMHDYFTSALPFTQRGPVVKIPLGETAKVVGTAQVNGVIDIDKPVLSSSSSSGLSFVTEGTTVRNKEVLNFYNSSGSTANIVGDGHLDNPITGISGNNMNGIAAANVDTSNLEVDLSEATGISILDLRRFAKLQSWLEKNAIGGNTPGENIRNHFGVRPSDQSLDKPIFLGGGRVPIDISNVLQTSQSTDTSALATPSGYARANGYAGFRNRYFREHGWILGLLYVMPRSTYMQGTRRYWDRKSRFDYFWMEFERIGEQPVYGYEIYDDGLASDENNGEFGYNPRYSDYKYIPSSVHGDFKTSLSFWHAARIFSERPKLNSSFLHLGDDINRIFAVDESVSDQKCWFWIRNTVKVRRPMLKNPTSILG
Physico‐chemical
properties
protein length:626 AA
molecular weight: 70733,43380 Da
isoelectric point:5,88076
aromaticity:0,13419
hydropathy:-0,39425

Domains

Domains [InterPro]
IPR037002
ATT
10–239
IPR037002 IPR037002
IPR003514
STR
14–620
IPR003514
IPR016184
Unmapped
14–554
IPR016184
UPW41925.1
1 626
Architecture
ATT
STR
ATT
ATT 10-239 | STR 240-329 | ATT 330-626
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW41925.1
1 626
Domain Start End Length (AA) Confidence
N-terminal 1 310 310 0,9180
Central domain 311 509 200 0,1303
C-terminal 510 626 116 0,7174
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-310
Central
311-509
C-terminal
510-626

Taxonomy

  Name Taxonomy ID Lineage
Phage Dipodfec virus RodF1_68
[NCBI] 		2929308 Viruses > Monodnaviria > Sangervirae > Phixviricota > Malgrandaviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW41925.1 [NCBI]
Genbank nucleotide accession
OM869696 [NCBI]
CDS location
range 1 -> 1881
strand +
CDS
ATGTCTATTTTTAATACAGTTAATTTACCGAAGCCGTTCCGTTCTAAGTATAATTTGACGCATGAGCGGAAATTATCGTGTCAAATGGGTCGGTTGATTCCTTTTTTTTGTGAGGAGGTTCTACCGGATGACAAATGGTCTGTTCAGTCAGCTTTTCGGCTTGAGCTCGCACCATTGATTGCTCCTTTGATGCACAATGTAGACGTGTATCAGTACTTTTTTTATGTCCCTAACTACCTTCTTTCCAGCGCTTGGAATACTTGGATTTCTCAGGGAGAGCCTGCAGATAGTCCTAATATCCCCTACCCTTGTCGGTTTATTCTTTCTGATGACCAATTCCGGGGTTTGGATGCCGATAATTTGAAGTTGTTTGTAGGTCCTGGTACACTTTTAGATTATTTGGGCTTTTCGAATGAGAATGCCCGGACAGGTAAAGGTTATGATTCTTCTGTTAAAGGTGTTGATTTAAAGGACTATTCTTGTTTTCCTTTTTTGGCTTATAATGGGATATGGCTGAATTATTTTCGTAATGAAAACTTCGAGCCTCTTCCCACTGAGTGGGGTAATCCCGGAGGTTATGTGCAAGGTTTAGACCAAACTCAAAATATTAATCTCTCGGATTGGAAGGCATGGAATTTCTATTATAGGAATAATGTCGTTGCTCCTATTATATATTATTTAAATCCTTTGGATGATGATGATTTTGGCGGTGCATCCGGTGATGCGATTAATACTTCGCGTTTTTTGCCTCATATTAAGCCTCGTAAGGCTAATTTTATGCATGATTATTTTACCTCTGCCCTACCGTTTACTCAGCGTGGTCCGGTTGTAAAAATTCCCCTTGGTGAGACTGCGAAAGTTGTCGGTACTGCGCAAGTTAATGGTGTAATTGATATTGATAAACCTGTACTTAGTAGTTCGTCTTCTTCCGGTTTGAGTTTTGTTACTGAGGGTACCACCGTGCGTAATAAGGAGGTTTTGAATTTTTATAACTCAAGTGGTTCTACGGCTAATATTGTAGGAGACGGTCATTTGGATAATCCTATTACTGGTATTTCCGGAAATAATATGAATGGTATTGCTGCTGCTAATGTAGATACCTCTAATTTGGAGGTTGATTTGTCTGAGGCGACAGGTATTTCTATTCTTGATTTGCGCCGCTTTGCGAAATTACAGTCTTGGTTAGAGAAAAACGCTATAGGAGGTAATACGCCCGGTGAAAATATCCGTAATCATTTTGGTGTCCGTCCGTCTGACCAATCTTTGGATAAACCTATTTTCCTTGGTGGAGGACGTGTTCCTATTGATATTTCGAATGTATTACAAACGTCTCAGTCGACGGATACTTCTGCCCTGGCTACTCCGTCCGGTTATGCTCGTGCGAATGGTTATGCCGGGTTTCGTAATCGTTACTTCCGTGAACATGGTTGGATACTTGGTTTGCTCTATGTGATGCCTCGTTCGACGTATATGCAAGGTACACGCCGCTATTGGGATAGGAAAAGCCGCTTTGATTATTTTTGGATGGAATTCGAACGCATTGGAGAACAGCCGGTGTATGGTTATGAAATCTATGATGATGGTTTGGCGTCTGATGAAAATAACGGCGAATTTGGTTATAATCCGCGTTATTCGGACTACAAGTACATTCCGTCTTCTGTGCATGGAGATTTTAAAACGTCGCTTTCGTTTTGGCATGCTGCGCGTATTTTTTCCGAGCGTCCAAAGCTTAACTCCTCGTTCCTACATCTTGGTGATGATATTAACCGTATCTTTGCCGTGGATGAATCAGTGAGTGACCAAAAGTGTTGGTTTTGGATACGTAATACCGTTAAAGTACGTAGACCTATGCTAAAGAATCCGACCTCGATACTTGGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
13ba8b9e3404ce1d86fafbc3b6c191510039cdbb2d99a46330f208db80c0ef7f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5292
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Towards deciphering the DNA virus diversity associated with rodent species in the families Cricetidae and Heteromyidae Lund,M., Larsen,B.B., Gryseels,S., Kraberger,S., Rowsey,D.M., Steger,L., Yule,K.M., Upham,N.S., Worobey,M., Van Doorslaer,K. and Varsani,A. — — GenBank