Protein

View in Explore
Genbank accession
QGF19693.1 [GenBank]
Protein name
putative tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSLVYNAVADNDRALWASLMLSAGKTLVAGSFEQGATVSSANDAVWYESAARCYVWNGAVPLTVPAGSSPDSTGGLGPTAWVEVASAPSVIQLPLAQAKARTYNTGQLVRITDVGFLYRFNPNRTLLDGFAESAITVDDELHKLVASGGMLEFVDYGSLSVVEERNYAAYQARMRIGSSIGLVSYGDSITWGQRPDGGQSVNPYPAVIANTMSTRTRSTWTQQNLASPGDRALTQYIRTMQDGTTGHISTIMLGINDTLYSTNNGEFPENITGNTLYGVNNYITIMRKFVARELLRGRCVVILGVTQFVSLNLGPMGNMTAPYLVRTYDMAAKQVAAEFGCMFVDTRRDITQQFGVSESCHDGIHLRDDFLPVIGKRFACVFMQQDYKNPVKLKTGDVFIPNYLHQPIMSNRILQLSPFQNGTSPPFGGGVSNPDAMGVLLPNDATGGSVTFAFYLDSDSAVIYPSIHSDGSAYSFDLILDDGAMQPDYPSDVEIIPVLRDRQYILSGRSISGSASKNRSTERYSQISTACYMHVTTRGWHMITFNMGMNAGVAAVEGLVLDSWTNVKNNDVFGGISGSAMWNSSGTELVGLVTGVTNPATGVFDVGISNLVVENYRVEVESTEDTTPLVYRVVYKSNNSFRVLFWDAAGAAVTPTSFRVRVLGGK
Physico‐chemical
properties
protein length:666 AA
molecular weight: 72181,59270 Da
isoelectric point:5,31924
aromaticity:0,09610
hydropathy:-0,04880

Domains

Domains [InterPro]
DC_1280
ATT
6–159
DC_1280 SSF52266 DC_0735
IPR040775
RBD
25–85
IPR040775 SSF52266
G3DSA:2.10.10.80
ATT
26–93
G3DSA:2.10.10.80 IPR036514
IPR013830
ENZ
185–367
IPR013830
QGF19693.1
1 666
Architecture
ATT
STR
RBD
ATT 6-159 | STR 175-382 | RBD 383-640 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGF19693.1
1 666
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,9930
Central domain 162 360 200 0,6220
C-terminal 361 666 305 0,4654
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-360
C-terminal
361-666

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA2
[NCBI] 		2608298 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF19693.1 [NCBI]
Genbank nucleotide accession
MN271656 [NCBI]
CDS location
range 39752 -> 41752
strand +
CDS
ATGTCATTAGTATACAACGCAGTAGCAGACAACGACCGCGCTTTATGGGCTTCTCTGATGCTGTCCGCAGGTAAGACGCTGGTAGCGGGTAGCTTTGAGCAAGGTGCTACAGTATCATCCGCTAACGATGCGGTATGGTATGAGTCTGCGGCGCGGTGTTATGTCTGGAATGGCGCAGTGCCTCTGACAGTTCCTGCTGGCTCCTCTCCTGACTCTACGGGCGGCTTAGGCCCAACTGCATGGGTAGAGGTTGCGAGCGCGCCTAGCGTCATCCAGCTGCCTCTGGCGCAGGCTAAGGCGCGTACCTACAATACAGGTCAACTGGTACGTATTACGGATGTTGGTTTCCTGTACCGCTTCAACCCTAATCGTACACTGCTTGATGGCTTTGCTGAGTCTGCCATCACAGTAGACGACGAACTGCACAAGCTGGTAGCCTCTGGCGGTATGTTGGAGTTTGTGGACTACGGTAGCCTGTCTGTTGTAGAGGAGCGTAACTACGCAGCGTATCAAGCGCGTATGCGTATCGGTTCAAGCATCGGTCTGGTGTCCTATGGCGACAGCATTACGTGGGGTCAACGCCCCGATGGTGGGCAGTCGGTTAACCCGTACCCAGCTGTAATCGCCAACACTATGAGTACACGTACCCGTAGTACTTGGACGCAGCAGAACTTAGCATCGCCGGGTGACCGAGCACTGACGCAGTACATCCGTACTATGCAGGATGGTACTACCGGTCATATCTCCACAATTATGCTGGGTATCAATGATACGTTGTACAGCACCAACAACGGTGAGTTCCCTGAGAACATCACAGGTAATACGCTGTACGGGGTTAACAACTACATCACCATTATGCGTAAGTTCGTTGCCCGTGAGTTGCTACGTGGTCGTTGTGTGGTTATCCTCGGTGTTACTCAGTTCGTTAGTCTGAACTTGGGTCCTATGGGTAACATGACTGCACCGTACCTTGTGCGTACGTACGACATGGCAGCTAAGCAGGTTGCGGCAGAGTTCGGCTGTATGTTCGTAGACACTCGCCGTGATATCACGCAGCAGTTCGGTGTCAGTGAGAGTTGCCACGATGGTATCCACTTGCGGGATGACTTCCTACCGGTTATCGGTAAGCGCTTCGCGTGCGTGTTCATGCAGCAGGATTACAAGAACCCGGTTAAGCTTAAGACTGGCGATGTGTTCATCCCGAACTATCTGCACCAGCCTATCATGTCCAACCGTATCTTGCAGCTGAGTCCGTTCCAGAACGGTACGTCACCTCCTTTCGGTGGCGGTGTCAGTAACCCGGATGCAATGGGTGTGCTTCTGCCTAACGACGCGACGGGTGGTAGCGTTACGTTCGCGTTCTACTTGGACTCTGATAGCGCTGTTATCTATCCGAGCATCCACTCAGACGGTTCAGCGTACAGCTTCGACCTCATCCTTGATGATGGTGCGATGCAGCCTGACTACCCATCTGATGTCGAGATTATCCCTGTGCTTCGTGACCGTCAGTACATCCTGTCTGGTCGCAGTATCTCTGGTTCCGCTAGTAAGAACCGCAGCACAGAGCGGTACTCACAAATCAGCACAGCGTGTTATATGCACGTCACTACGCGTGGCTGGCACATGATTACCTTTAACATGGGTATGAACGCAGGTGTAGCCGCTGTAGAGGGTCTGGTACTGGATAGCTGGACTAACGTCAAGAACAACGACGTGTTCGGTGGTATCAGTGGTTCCGCTATGTGGAACAGCTCTGGTACCGAGCTAGTTGGTCTGGTTACCGGTGTGACCAACCCAGCGACTGGTGTGTTCGATGTAGGTATCAGCAATCTGGTCGTAGAGAACTACCGAGTAGAGGTGGAGAGTACTGAGGATACTACCCCGCTGGTGTATCGTGTAGTGTACAAGAGCAACAACTCATTCCGGGTTCTGTTCTGGGATGCTGCTGGTGCTGCTGTTACCCCGACCTCCTTCCGAGTGCGGGTACTAGGTGGCAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d71d4abe318e5acdc918b5a3952c4209d674829a3b59e7a81b2b84dc5391ffd5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7182
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-based cocktail containing Podoviridae and Myoviridae bacteriophages inhibit growth of Pectobacterium spp. under in vitro and in vivo conditions Zaczek-Moczydlowska,M., Young,G.K., Trudgett,J., Fleming,C.C., Campbell,K. and OHanlon,R. 2020-04-02 — GenBank