Protein

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Genbank accession
YP_009216885.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MTFKELVNKVRNLVLEAEKVTIEDTENNFTSDNVEDALKEVFQSGVDAKNNVVTALNSKGAEVTTSDTWEEIKNKINDSKCSFALFETTFTNKRFIINKIFDEDVKEMTLFHNDIDCYFIVAKFYIYKMDSNFNLIYKNRLTYNPDGAYIDENYIYIGDVYNLSKYDKESGNLVSSRTNIGCLYMCGDENYLYAVVTSGLGGVRPSEKFIKIDKLNLSTIIENGDGTDNSTYEFRYHEKFVMNSNNIYFMKAKQ
Physico‐chemical
properties
protein length:254 AA
molecular weight: 29296,55830 Da
isoelectric point:4,86322
aromaticity:0,12992
hydropathy:-0,44724

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009216885.1
1 254
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,9884
Central domain 97 243 148 0,4143
C-terminal 244 254 10 0,4537
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-243
C-terminal
244-254

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCDHM19
[NCBI] 		1522092 Uroviricota > Caudoviricetes > Lubbockvirus >
Host Clostridium
[NCBI] 		1485 Bacteria > Firmicutes > Clostridia > Clostridiales > Clostridiaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009216885.1 [NCBI]
Genbank nucleotide accession
NC_028996 [NCBI]
CDS location
range 25407 -> 26171
strand +
CDS
ATGACTTTTAAAGAGTTAGTTAATAAAGTTAGAAATCTTGTATTAGAAGCAGAGAAAGTAACTATAGAAGATACAGAGAATAATTTTACAAGTGATAATGTAGAAGATGCTTTAAAAGAGGTTTTTCAGTCTGGAGTTGATGCTAAAAATAATGTAGTAACAGCATTAAACTCCAAGGGCGCAGAGGTTACTACAAGCGATACATGGGAAGAAATAAAGAATAAAATAAATGATAGTAAATGTAGTTTCGCTTTGTTTGAAACTACATTTACTAATAAAAGGTTTATCATAAATAAAATATTTGATGAAGACGTAAAAGAGATGACATTGTTTCATAACGATATAGATTGTTACTTTATAGTAGCTAAGTTTTATATATATAAAATGGATTCTAATTTCAATTTAATTTATAAAAATAGACTTACTTATAACCCAGATGGTGCCTATATAGATGAGAATTATATTTATATAGGAGATGTGTATAATCTATCTAAATATGACAAAGAAAGTGGGAATCTTGTTTCTTCACGTACTAATATTGGTTGTCTTTATATGTGTGGAGATGAAAATTATTTATATGCAGTTGTAACTTCTGGGCTTGGAGGAGTAAGACCATCTGAAAAGTTTATCAAAATAGATAAGTTAAATTTGTCAACCATTATAGAGAATGGAGATGGAACAGATAATAGCACATATGAGTTTAGATACCACGAAAAATTTGTAATGAACTCAAATAACATTTATTTTATGAAAGCAAAACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
55ae222afa58895d068f096c8739b271f865d50e26f39b13fb20733ce359cc6a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7998
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Abundant and diverse CRISPR spacers in Clostridium difficile strains and prophages target multiple phage types within this pathogen Hargreaves,K.R., Flores,C., Lawley,T.D. and Clokie,M.R.J. 2014-10-31 — GenBank