Protein

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Genbank accession
QKN86512.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MTERVNDKDIDFNLIFASAAPSVRELEEAQYLKGWSFLGDEIPPEFEDFDSVMRLQDRKIQILKQASDGVDDKIAAVSQKVDDGIDGVNQKVDEEIAALDKKIEKSGGGYVTQVMWHSTRKHLPAGCLLSDGQEVDRATWPSLFEEIEAGRVPVVPEADWLANPKLRGSYTLGDGVNTFRVPDYNGRSVGSLGRIFLGGDGQNAGLEGQIQESANKRHNHAITDNGHSHGVNDAGHSHEKSAWVANPAGGGQIYRDPEVWITTNAADKVEVHYKTGVSTSGISLQESESGITLAEDGEADARPSNVAGCYIIRGAGEKMNEGSVDALQLATLVNQLAAKVASLEEQGNAGYVGKVDWHPLRESVPHGRIPADGQLLSRELYPALWEAVRDRRVPVTTEELWNSDGKRRGCYTEGDGSTNFRVPDYNGKTSGSLGAGFLRGDGLNSLSESGMIQGDAIRNIKGYAGAVANYKALASSGALSLDADQGPMYVNGANTGVWAALRNMSIDVSKAVPTAADNHPVNVTGCFVIQYAGAVINSGYVDAVKAIEQISKLDSRVGALESKPQLFEIMYPYGTPDTPATLGTNQRLVFHPPAKFNGRTIQCKLQLRYNGFWHDWSTFIYDSNGSASSSTGAMAGVVNNCGSATDTTPTYIVIQTSKDALGTESRFDGNIAGLSGWLTEAHYRVLIWSVD
Physico‐chemical
properties
protein length:691 AA
molecular weight: 74405,69790 Da
isoelectric point:5,05488
aromaticity:0,07670
hydropathy:-0,38365

Domains

Domains [InterPro]
SSF88874
STR
121–313
SSF88874 Coil SSF88874 DC_0781
DC_2049
STR
199–430
DC_2049 DC_1811
QKN86512.1
1 691
Architecture
STR
RBD
STR 121-565 | RBD 566-691
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QKN86512.1
1 691
Domain Start End Length (AA) Confidence
N-terminal 1 562 562 0,6416
Central domain 563 680 119 0,0393
C-terminal 681 691 10 0,9940
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-562
Central
563-680
C-terminal
681-691

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenM_25
[NCBI] 		2736211 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QKN86512.1 [NCBI]
Genbank nucleotide accession
MT366933.1 [NCBI]
CDS location
range 38920 -> 40995
strand +
CDS
GTGACAGAAAGAGTTAACGACAAAGACATAGATTTCAATCTGATTTTCGCGAGTGCAGCGCCAAGTGTTCGCGAACTTGAGGAGGCGCAATATCTGAAAGGGTGGTCTTTCTTGGGGGACGAGATCCCCCCTGAATTTGAGGATTTCGATTCTGTGATGCGCCTGCAAGATAGAAAGATCCAGATTCTAAAACAGGCGTCCGATGGCGTAGATGATAAAATCGCAGCCGTAAGCCAAAAGGTTGACGACGGAATAGATGGCGTAAACCAAAAGGTTGACGAGGAGATCGCGGCGCTCGACAAGAAGATAGAGAAATCAGGCGGCGGCTACGTGACGCAAGTTATGTGGCATTCAACACGGAAGCACTTACCGGCTGGTTGCTTACTGTCTGACGGGCAAGAGGTAGACCGTGCAACTTGGCCTAGCCTGTTCGAGGAAATAGAAGCTGGACGCGTTCCGGTTGTTCCGGAGGCTGATTGGTTGGCTAACCCGAAATTACGCGGTAGCTACACGTTAGGCGACGGGGTTAATACTTTCCGTGTTCCGGATTATAACGGGCGCTCGGTTGGCTCACTTGGTCGAATCTTCTTGGGCGGTGACGGTCAAAATGCAGGGCTTGAGGGTCAGATCCAAGAGTCGGCAAATAAGCGACACAATCACGCGATAACCGACAACGGACACAGCCACGGAGTGAATGACGCAGGTCATAGTCATGAAAAATCTGCTTGGGTAGCCAATCCAGCTGGCGGCGGTCAAATATACAGAGATCCGGAAGTATGGATTACAACCAACGCAGCGGATAAAGTGGAGGTTCATTACAAAACCGGAGTATCCACAAGCGGAATCTCATTGCAGGAAAGCGAAAGCGGCATAACGTTAGCGGAAGATGGAGAAGCCGACGCGCGTCCGTCAAACGTGGCAGGCTGCTACATTATTCGCGGCGCTGGCGAGAAAATGAATGAGGGTTCAGTGGATGCTCTGCAACTGGCAACTCTTGTAAACCAACTAGCCGCTAAGGTGGCAAGTCTGGAGGAGCAAGGAAACGCCGGTTATGTTGGAAAGGTTGATTGGCACCCATTACGCGAAAGCGTGCCGCATGGCAGAATTCCGGCAGACGGGCAACTGTTGAGCCGCGAACTGTATCCGGCATTGTGGGAGGCTGTGAGGGATAGGCGCGTACCGGTAACAACTGAGGAGCTATGGAATTCTGACGGAAAACGACGTGGTTGTTATACCGAGGGTGACGGCTCCACAAACTTCCGCGTTCCGGACTATAACGGCAAAACTTCCGGATCTCTTGGCGCTGGGTTCTTGCGCGGTGACGGGCTGAACTCGCTTAGTGAAAGTGGCATGATTCAGGGCGACGCAATCAGAAACATTAAAGGTTATGCTGGCGCTGTTGCGAACTATAAAGCTCTCGCGAGTAGTGGGGCATTGTCTCTTGATGCTGATCAAGGCCCAATGTATGTAAATGGGGCGAATACTGGAGTTTGGGCAGCACTGCGAAATATGTCGATTGATGTATCCAAGGCTGTTCCAACGGCGGCAGACAACCATCCGGTAAACGTGACAGGTTGCTTTGTCATCCAGTATGCGGGTGCTGTAATTAATTCCGGTTACGTGGATGCCGTGAAAGCGATTGAGCAGATATCAAAACTGGATAGCAGGGTTGGCGCTCTTGAGTCTAAGCCGCAACTGTTTGAGATTATGTACCCGTATGGCACCCCTGATACTCCGGCGACACTTGGTACAAACCAGAGATTGGTTTTCCATCCACCTGCCAAATTTAACGGGCGCACAATACAATGCAAATTGCAATTGAGGTACAACGGATTTTGGCATGACTGGAGCACTTTTATTTATGATTCAAACGGTAGTGCGTCTTCATCTACCGGAGCAATGGCTGGTGTTGTGAATAATTGCGGCTCAGCAACAGACACAACACCTACTTACATCGTGATTCAAACATCAAAGGACGCGCTAGGAACGGAGTCAAGATTTGATGGTAATATTGCTGGATTAAGCGGCTGGCTAACCGAGGCGCACTATAGGGTGCTAATTTGGAGTGTAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9bca808144464beb374e5c4f8f5ffbd5021be06ef23fe22877d0dddc77c0facd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7085
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequences of Yersinia phage genomes Hammerl,J.A. and Hertwig,S. 2018-05-10 — GenBank