Protein

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Genbank accession
YP_009816548.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MEVKMRKLTNFKFFYNTPFTDYQNTIHFNSNKERDDYFLNGRHFKSLDYSKQPYNFIRDRMEINVDMQWHDAQGINYMTFLSDFEDRRYYAFVNQIEYVNDVVVKIYFVIDTIMTYTQGNVLEQLSNVNIERQHLSKRTYNYMLPMLRNNDDVLKVSNKNYVYNQMQQYLENLVLFQSSADLSKKFGTKKEPNLDTSKGTIYDNITSPVNLYVMEYGDFINFMDKMSAYPWITQNFQKVQMLPKDFINTKDLEDVKTSEKITGLKTLKQGGKSKEWSLNNLSLSFTKLQEMMLSKKDEFKHMIRNEYMTIEFYDWNGNTMLLDAGKISEKTGVKLRTKSIIGYHNEVRVYPVDYNSAENDRPILAKNKDILIDTGSFLNTNITFNSFAQVPILINNGILGQSQQANRQRNAESQLITSRIDNVLNGSDPKSRFYDAVSVASNLSPTALFGKFNEEYNFYKQQQAEYKDLALQPPSVTESEMGNAFQIANSINGLTMKISVPSPKEITFLQKYYMLFGFEVNDYNTFIEPINSMTICNYLKCTGTYTIRDIDPMLMEQLKAILESGVRFWHNDGSGNPMLQNPLNNKFRVGV
Physico‐chemical
properties
protein length:591 AA
molecular weight: 68950,46790 Da
isoelectric point:6,69742
aromaticity:0,12521
hydropathy:-0,53892

Domains

Domains [InterPro]
IPR031772
TAS
7–119
IPR031772
IPR031772
TAS
7–115
IPR031772
DC_0080
STR
88–432
DC_0080
YP_009816548.1
1 591
Architecture
TAS
STR
TAS 7-87 | STR 88-432 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Pabna
[NCBI] 		2483713 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus subsp. aureus RN4220
[NCBI] 		561307 Bacteria > Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009816548.1 [NCBI]
Genbank nucleotide accession
NC_048107 [NCBI]
CDS location
range 8455 -> 10230
strand -
CDS
ATGGAGGTAAAAATGAGAAAATTAACAAATTTTAAATTTTTCTATAACACACCGTTTACAGATTATCAAAATACGATTCATTTTAATAGTAATAAAGAACGTGATGATTATTTTTTAAATGGCCGTCATTTTAAATCACTAGACTATTCCAAACAACCGTATAATTTTATACGTGATAGAATGGAAATCAATGTTGATATGCAGTGGCATGATGCACAAGGGATTAACTACATGACGTTTTTATCAGATTTTGAGGATAGACGATATTATGCGTTTGTTAATCAAATCGAATATGTGAATGATGTTGTGGTAAAAATATATTTTGTGATTGATACTATTATGACGTACACGCAAGGTAATGTATTAGAGCAACTCTCAAACGTTAATATTGAACGTCAACACTTATCAAAACGCACGTATAACTATATGTTACCAATGTTACGTAACAATGATGATGTGTTAAAAGTATCAAATAAAAACTATGTGTATAACCAAATGCAACAGTATTTGGAAAATTTAGTGTTATTCCAGTCAAGCGCTGATTTATCAAAGAAATTTGGTACGAAAAAAGAGCCAAACTTAGATACGTCTAAAGGTACGATATATGATAATATCACATCACCAGTCAACTTATACGTCATGGAATATGGTGACTTTATTAATTTTATGGATAAAATGAGTGCTTATCCATGGATTACACAAAACTTTCAAAAGGTTCAAATGTTACCTAAAGACTTTATTAATACAAAAGATTTAGAGGACGTTAAGACAAGTGAAAAAATTACTGGATTAAAGACGTTAAAACAAGGTGGAAAATCAAAAGAATGGAGTTTAAACAATTTATCATTAAGTTTCACAAAGCTTCAAGAAATGATGTTGTCTAAAAAAGATGAATTTAAGCATATGATACGTAATGAGTACATGACGATTGAATTTTATGATTGGAATGGGAATACGATGTTACTCGACGCTGGTAAAATTTCAGAAAAAACAGGTGTTAAGTTACGTACAAAATCAATCATTGGTTATCATAATGAAGTACGTGTATATCCAGTAGATTATAACAGTGCTGAAAACGATAGACCTATTCTCGCAAAAAATAAAGATATATTAATTGATACAGGTTCATTCTTAAATACAAATATAACATTTAATAGTTTTGCGCAAGTGCCTATATTAATTAATAACGGAATTTTAGGACAATCACAACAAGCCAATAGACAGCGAAATGCAGAAAGTCAATTAATCACAAGTCGTATAGATAATGTATTAAATGGTAGTGACCCAAAATCACGTTTTTATGACGCTGTAAGTGTAGCAAGTAATTTAAGTCCAACGGCTTTATTTGGTAAGTTTAATGAAGAATATAATTTCTACAAACAACAACAGGCAGAATATAAAGATTTAGCCTTACAACCACCCTCAGTGACAGAATCAGAAATGGGAAATGCATTCCAAATCGCAAATAGCATTAACGGTTTAACGATGAAGATTAGTGTACCGTCACCTAAAGAAATTACATTTTTACAAAAATATTATATGTTGTTTGGTTTTGAAGTAAATGACTATAATACATTTATTGAGCCAATTAACAGTATGACTATATGCAACTATTTAAAATGTACAGGTACGTATACAATACGTGACATTGACCCTATGTTAATGGAACAATTAAAAGCTATTTTGGAATCTGGTGTGAGATTTTGGCATAATGACGGTTCAGGTAATCCAATGTTACAGAACCCTTTAAATAATAAATTTAGAGTAGGTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9f75a9c0ba4f235d358d6b39f14b6df181d982129c3c7eea27739972ed5ea812
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3967
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of Staphylococcus podophages JBug18, Pike, Pontiff, and Pabna Bari,S.M.N., Hernandez,A.C. and Hatoum-Aslan,A. — — GenBank