Protein

View in Explore
Genbank accession
URP86285.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,56
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVAKSFRATSGLDAAGEKVINVGKASRSVLSDGVNVDFFNEFNTVQQYDSTRGYAAFMAIIYARRIWYARADIASPAGAFDETKWIATRNDPKWVYNNVTNPDGLPVESGTYMMCDGRFSELSYILPDSPIEGDIVTFKDGGGLAGVNSILVRSNTRQIRLRDIQSSSYRLTHPYMTVAFIFNGNLWRVAEMRDNRDSQFVNATGLLPFQMQAGMVTFRNSGTGKITLQLPKYANDGDSITTYDLDRLASVNVATLQVYPGSGHTISYDGINNVPSVTSQRSGYGIFMFDQANNRWVVYDGDQRVRLRRISDDLNMLPNDYVFITPIAVNPPTVRNVTLTLPQDVAEGDRVYISMYMMGKTQNCTIKVKDGSGEKIRTNKNMMQFPQRKDYPPDDWFSVDSLTFNADTDYLPYMELSYLKATKEWVVAQYRPIIERVDPTNRSRLGVIALATQAEVNKNWEDLPSDELAVTPRTLANKTATETRRGIARLATTAEVNQNTTATFLDDVIVTPKKLNERSATEDRRGVLEIATQAETNAGTDDTTAITPKKLDTRRATETLAGIGKLVTTGATTAEGALRGDAGTNVYNFNNGVDLITPKSLNEKTATEKSKGLVVLATENEVVTGAAAGSASMPIVVTPEMLHRKTSTETRIGLIEIATQTETNTGTDDLRAVTPKKLNDRKATESLDGIIALATTAEVAAGTVTNKAVVPVKLKEFFDVTSHVAVATADGLTQSGTIWTTINLGIASATETQRGTLRVATQGETDAGTLDNVVITPKKLQAKKATDTAEGIIRCATNAEAGAGTATNLAITPATMQFLNGTDPAWGATTTRRGAVFITTKSNTFIGDNLVGSTQPVDSYLEDFYAVSPRGLNFALQNFLPLNATAQNSLKLGGVVAASWMRRDADQTVTGNNTFNGTSNFVGNVTTNGTLTANAAVTVNNTVTTNNNINQSAKANTVYANTVLSTATAGTKNLLRTFRGGVTDTTWHETVQGTTYRLATGTTDTTDVLTVGDVSNGTMAYSGTTLRLNGKALANTNATGDVTIASDASPTVQLRTAATNGWNGVTISNDNGVTTATVINTRNFTQHLDSTYVNTAGDTMTGALSVSVNGTGGRFTSVSGTAHVQAGDFSGNVQKMRLTGIDDKVLTEFNINITDYNKAMINGNLIYHAGRRPTPAEIGAVALVGSTVDTLVVRDYIKIGNVKIFANPVTKACEFVWEE
Physico‐chemical
properties
protein length:1219 AA
molecular weight: 131281,44080 Da
isoelectric point:5,89542
aromaticity:0,06973
hydropathy:-0,25644

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URP86285.1
1 1219
Domain Start End Length (AA) Confidence
N-terminal 1 354 354 0,7977
Central domain 355 708 355 0,0993
C-terminal 709 1219 510 0,5577
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-354
Central
355-708
C-terminal
709-1219

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacter phage EC-F2
[NCBI] 		2662273 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Enterobacter cloacae
[NCBI] 		550 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URP86285.1 [NCBI]
Genbank nucleotide accession
MN508624 [NCBI]
CDS location
range 39447 -> 43106
strand +
CDS
ATGGTAGCTAAATCATTCCGCGCCACAAGTGGCCTTGATGCTGCTGGCGAAAAAGTTATCAACGTTGGTAAAGCATCGCGCTCCGTGTTGAGTGACGGCGTGAACGTTGACTTTTTTAACGAATTTAACACCGTACAACAGTACGATTCAACCCGTGGCTATGCTGCTTTCATGGCTATCATTTACGCGCGTCGTATCTGGTACGCTCGCGCTGATATCGCATCACCTGCGGGGGCTTTCGATGAAACAAAGTGGATCGCAACACGTAATGATCCAAAATGGGTATATAACAACGTAACCAATCCAGACGGCTTGCCTGTTGAGTCTGGTACGTACATGATGTGTGATGGGCGATTCTCTGAACTATCGTACATTCTGCCAGATTCCCCGATTGAAGGTGATATTGTAACCTTTAAAGACGGTGGCGGTCTTGCTGGTGTCAACAGCATTCTGGTACGTTCAAACACTCGTCAGATCCGTCTGCGTGATATTCAGTCAAGCTCTTACCGACTGACTCACCCATATATGACCGTAGCGTTTATCTTCAACGGTAACTTATGGCGTGTAGCGGAAATGCGTGATAACCGCGATTCTCAGTTTGTAAACGCAACTGGTTTGCTTCCTTTCCAAATGCAAGCGGGTATGGTAACATTCCGTAACAGCGGTACAGGTAAAATCACCCTCCAGTTGCCGAAGTATGCAAACGATGGTGATTCAATCACAACCTACGATCTGGATCGTCTTGCTTCGGTGAACGTTGCGACTCTGCAAGTTTATCCCGGTAGCGGACACACGATCAGTTATGACGGTATCAATAACGTACCCTCTGTGACTTCACAGCGTTCCGGTTATGGTATTTTCATGTTCGATCAGGCTAATAACCGTTGGGTTGTTTATGACGGTGATCAGCGCGTTCGTCTGCGTCGTATCAGTGATGACCTGAACATGTTGCCGAACGATTACGTGTTCATCACTCCGATTGCTGTCAACCCACCAACTGTACGTAATGTAACGCTGACTCTTCCGCAAGATGTTGCAGAAGGTGATCGCGTATATATCAGTATGTACATGATGGGGAAAACGCAGAACTGTACAATCAAAGTTAAAGATGGTTCCGGTGAAAAGATCCGCACCAATAAAAACATGATGCAGTTCCCACAGCGTAAGGATTATCCGCCTGATGACTGGTTCAGTGTTGACTCTCTGACTTTCAACGCCGATACTGACTATCTTCCATATATGGAACTGTCATATCTGAAAGCTACGAAAGAATGGGTAGTTGCACAGTATCGCCCGATCATTGAACGTGTCGATCCAACAAACCGTTCTCGTCTGGGTGTTATCGCACTGGCTACACAGGCAGAAGTAAACAAAAACTGGGAAGATTTGCCGTCTGATGAACTGGCAGTAACCCCGCGCACATTGGCGAATAAAACCGCTACTGAAACGCGTCGTGGTATCGCTCGCCTGGCAACAACTGCGGAAGTTAACCAGAACACGACAGCAACCTTCCTTGATGACGTGATCGTGACGCCTAAAAAGCTGAACGAACGATCAGCAACAGAAGATCGTCGTGGGGTGCTGGAAATCGCAACTCAGGCAGAAACAAACGCTGGTACTGATGACACTACCGCAATCACGCCTAAAAAGCTCGACACACGCCGCGCGACCGAAACCCTAGCAGGTATCGGAAAACTCGTTACAACGGGGGCTACGACAGCGGAGGGGGCTTTACGTGGGGATGCTGGTACGAACGTCTACAACTTCAATAACGGTGTTGATCTGATCACTCCGAAATCATTGAACGAGAAGACGGCGACCGAAAAGTCAAAAGGTCTGGTTGTTCTGGCGACTGAAAACGAAGTGGTGACTGGTGCTGCTGCGGGATCTGCTTCAATGCCGATCGTAGTAACTCCTGAAATGTTGCATCGCAAAACGTCTACTGAAACGCGTATCGGATTGATTGAGATCGCAACCCAGACAGAAACGAACACGGGAACCGATGATCTTCGTGCGGTAACGCCTAAGAAGCTGAACGATCGCAAGGCTACTGAATCGCTTGATGGTATTATTGCCCTCGCTACTACTGCGGAAGTTGCAGCAGGCACAGTGACGAATAAGGCAGTGGTTCCGGTTAAGCTGAAAGAGTTCTTCGACGTTACGAGTCATGTTGCGGTTGCAACTGCTGATGGTTTAACTCAGTCCGGTACTATCTGGACAACGATTAACCTGGGGATTGCGTCTGCTACTGAAACACAGCGCGGTACTCTGCGCGTAGCGACTCAGGGTGAAACTGATGCGGGTACTCTGGATAACGTGGTTATCACGCCTAAGAAGCTGCAAGCGAAGAAAGCGACTGATACCGCCGAAGGTATTATTCGTTGTGCGACTAACGCGGAAGCGGGTGCTGGTACTGCTACTAACCTGGCAATTACTCCGGCTACCATGCAGTTCTTGAACGGTACTGATCCGGCATGGGGTGCAACGACAACTCGACGCGGTGCGGTGTTCATCACTACCAAATCGAATACGTTCATCGGTGATAATCTGGTTGGTTCTACTCAGCCCGTAGATAGCTATCTGGAAGATTTCTACGCTGTATCGCCTCGCGGTCTGAACTTTGCTCTACAAAACTTCTTACCGTTGAACGCAACAGCACAGAACAGCCTGAAACTGGGCGGTGTGGTAGCTGCAAGCTGGATGCGTCGTGATGCAGATCAAACCGTAACGGGCAACAACACGTTCAACGGTACAAGCAACTTCGTTGGTAACGTAACCACTAACGGGACTCTGACGGCTAACGCTGCGGTAACTGTTAACAACACCGTAACCACGAACAATAACATTAACCAGTCTGCGAAAGCAAACACGGTTTATGCTAATACTGTTTTGAGTACAGCAACCGCTGGAACTAAAAACTTGCTTCGTACTTTCCGTGGTGGCGTGACGGATACTACATGGCATGAAACTGTTCAGGGAACTACGTATCGCCTGGCAACTGGCACAACCGACACGACCGACGTTCTGACTGTTGGTGATGTATCTAACGGCACAATGGCGTACTCCGGTACTACTCTGCGTCTGAATGGTAAAGCACTGGCTAACACGAACGCAACAGGTGATGTGACCATTGCAAGTGATGCAAGTCCTACGGTACAATTACGAACCGCTGCAACTAACGGTTGGAACGGTGTAACAATCAGTAATGATAACGGTGTGACTACTGCGACCGTGATCAACACCCGAAACTTTACCCAGCATCTTGACAGTACCTATGTCAATACAGCGGGCGATACTATGACTGGTGCGCTGTCAGTTAGCGTAAACGGTACGGGTGGACGCTTTACCAGTGTGAGCGGTACGGCACATGTTCAGGCGGGTGATTTCTCTGGGAACGTCCAGAAAATGCGCTTAACTGGCATTGACGATAAGGTATTGACTGAGTTCAACATCAATATCACCGATTACAACAAAGCGATGATCAACGGAAACCTGATTTATCATGCGGGTCGTCGTCCGACTCCTGCGGAAATCGGTGCTGTTGCGCTGGTGGGTTCAACCGTTGATACTCTGGTTGTTCGCGACTACATCAAAATCGGTAACGTGAAAATCTTCGCAAATCCAGTCACTAAGGCTTGTGAATTTGTGTGGGAGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8d31e1d099663ea61457bb62e6b50799b7cce449ac3bd40b44717ec99fdb8549
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5666
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Constructing and Characterizing Bacteriophage Libraries for Phage Therapy of Human Infections Gibson,S.B., Green,S.I., Liu,C.G., Salazar,K.C., Clark,J.R., Terwilliger,A.L., Kaplan,H.B., Maresso,A.W., Trautner,B.W. and Ramig,R.F. 2019 — GenBank