Protein

View in Explore
Genbank accession
QSJ04201.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNLKKNLPVELNHLFRKMLIENFRIMEFYYSVLKDSIQKHKDEEHAHTASQIDYENSTVDKQLKYQNKRISGLVLGHNGDGVQELRDSRVAIDSTPFNVLSERLYYDFNKINQTMESNYNAINKKIERIINVNDYGADPTGQTDSTEAFKKAFGNGGHHIHMTEGTYIVSGLKIPSNTILSGEGKEQTIIKLSDNAPEENIVITNLDMNGVAENIGIEGFSVDGNRARQGGTLKAAGGSRSSNVRFAGVKKGFIKNIKSFNSLLHGIDVTYASDEYSYAGDGVRVPRHLESEHIWIDNCESTGFGDDGITTHHSRYLFISNSYSHHPFKGGGNNNGIEVDDGSQYVYLDNNITEENFGGLEIKGHEPTSAASHVFVNNHISVNDNRSYNIRHIGHHIAKDIQSKTAYDVMLNNCTAVTPYKNEVYPGSTPRAMVVSAYRNVQINNFTAIGDGTFTAGMPVIAIQYRAENVTFNGLNIRGFKNASADVQIYGGGNRPKKITISNFNIIDSSSNTGIANGSRVYDTKIIGGNMQGQGTGTAIFSYNNNTEIIGVNAEKYTNQADLAGKLYKVMPTAVKGGLSAASTGAGALAQRSAIIASSGGSYAHSDRSFVIGSGASSQAYGSRSGVINSLESETLPGSYAQTIVNSRGVKSRGVYAFLMGYGTDGPRYENTTIDMSSTSGNIQTKGTVSSGQNFGDYAEYFESQSGQAIPNGTIVTLDGRYVRKAQVNDKPIGIISGTAGVILGDQMFHHKDKFLKDEFGVTLTELQLKEWEDDEGNKYSEEVEVPIPNPDYVEYEDEYIPRSERPEWNVVGLVGQVFTRFKGELKPNDYIKAENGVGVRDNVNGHYRVLEITTPYSTEKGYGVAVVLVK
Physico‐chemical
properties
protein length:871 AA
molecular weight: 95370,63910 Da
isoelectric point:5,95203
aromaticity:0,08955
hydropathy:-0,48863

Domains

Domains [InterPro]
DC_0125
ATT
1–211
DC_0125 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR012334
STR
110–573
IPR012334 IPR021865
IPR011050
STR
127–478
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
129–355
IPR024535 DC_0616
IPR006626
Unmapped
198–219
IPR006626
QSJ04201.1
1 871
Architecture
ATT
STR
RBD
ATT 1-211 | STR 212-642 | RBD 643-871
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QSJ04201.1
1 871
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9932
Central domain 145 676 533 0,9843
C-terminal 677 871 194 0,9162
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-676
C-terminal
677-871

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB-SscS-F1
[NCBI] 		2812861 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QSJ04201.1 [NCBI]
Genbank nucleotide accession
MW589261 [NCBI]
CDS location
range 79902 -> 82517
strand -
CDS
ATGAACTTAAAGAAAAATTTACCTGTGGAATTAAATCATCTATTTAGAAAAATGTTAATTGAAAACTTTAGAATTATGGAATTTTATTACAGCGTTCTAAAAGATAGTATTCAAAAACATAAAGATGAGGAACACGCTCATACAGCTAGTCAAATAGATTATGAAAATTCTACAGTAGACAAACAGTTAAAATATCAGAACAAAAGAATATCGGGTCTTGTATTAGGTCATAATGGAGATGGTGTTCAAGAACTAAGAGATAGTCGTGTAGCAATTGATAGCACACCATTTAACGTGTTATCAGAACGTTTGTATTATGACTTTAATAAAATTAATCAGACAATGGAAAGTAATTACAACGCAATAAATAAAAAGATTGAACGTATTATAAATGTAAATGATTATGGTGCAGACCCAACAGGTCAAACAGATAGTACAGAGGCATTTAAAAAAGCATTTGGTAATGGTGGACACCATATTCATATGACAGAAGGTACTTACATTGTGAGTGGTTTAAAAATACCTAGCAACACAATTTTAAGTGGTGAAGGTAAAGAACAAACAATTATTAAATTATCAGATAATGCACCAGAAGAAAATATTGTTATTACAAACTTAGATATGAATGGTGTAGCTGAAAATATCGGAATTGAAGGTTTTTCAGTAGACGGTAATAGAGCTAGACAAGGTGGCACATTAAAAGCTGCAGGTGGATCTCGTTCATCTAACGTAAGATTTGCAGGTGTTAAAAAAGGATTTATTAAAAATATCAAATCATTCAATTCATTGTTACATGGTATTGATGTCACGTATGCAAGTGACGAATATTCATATGCTGGTGACGGTGTTAGAGTTCCTAGACATTTAGAATCAGAACACATTTGGATAGATAACTGTGAATCAACTGGTTTTGGTGATGACGGTATTACAACACATCACAGTAGATATCTATTTATTAGTAACTCTTATTCACACCACCCGTTTAAAGGTGGAGGTAACAATAACGGTATTGAGGTTGATGATGGCTCGCAATATGTTTATTTAGATAACAATATCACTGAAGAAAACTTTGGTGGACTTGAAATTAAAGGACATGAACCAACAAGTGCTGCATCACATGTATTTGTTAATAATCATATTTCTGTCAATGATAATCGCTCCTACAACATCAGACACATTGGACACCATATTGCAAAAGATATTCAAAGTAAAACAGCATACGATGTTATGTTGAACAACTGTACAGCAGTCACACCTTACAAGAACGAAGTATATCCAGGTTCAACACCTCGTGCAATGGTTGTATCAGCTTATAGAAATGTTCAAATTAATAACTTTACTGCAATTGGTGACGGTACATTCACAGCAGGTATGCCAGTAATCGCTATTCAGTATAGAGCAGAAAACGTTACATTTAATGGTTTGAATATTAGAGGCTTTAAAAATGCAAGTGCCGATGTTCAAATTTACGGTGGTGGTAATAGACCTAAGAAAATCACAATTAGTAACTTTAATATTATAGATTCTTCTTCTAACACTGGTATAGCCAACGGTTCAAGAGTTTATGACACTAAAATAATTGGTGGTAATATGCAAGGTCAAGGTACTGGTACAGCTATATTTAGTTATAACAATAACACAGAAATTATTGGTGTTAATGCTGAGAAATACACTAACCAAGCAGATTTAGCAGGTAAATTATATAAAGTAATGCCTACTGCTGTTAAAGGTGGCTTGAGTGCAGCATCTACAGGTGCAGGTGCATTAGCTCAACGTTCAGCAATTATAGCAAGTTCGGGTGGCTCATATGCACATAGCGATAGAAGTTTTGTTATAGGTTCAGGTGCTAGTTCACAGGCATATGGTTCACGTAGTGGTGTTATTAATTCACTTGAATCAGAGACATTACCTGGTTCTTATGCTCAAACAATTGTAAACAGTCGTGGCGTAAAATCTCGTGGTGTATACGCATTCTTAATGGGTTATGGAACAGATGGACCAAGATATGAGAATACAACTATTGATATGAGTTCAACAAGTGGTAATATCCAAACTAAAGGTACAGTATCATCTGGACAAAATTTCGGGGACTATGCTGAGTATTTTGAATCTCAAAGTGGTCAAGCTATTCCAAATGGAACAATCGTAACATTAGATGGTCGCTATGTTAGAAAAGCACAAGTTAACGATAAACCTATTGGTATTATTTCAGGTACAGCAGGTGTTATTTTAGGTGATCAAATGTTCCACCACAAAGACAAGTTCTTGAAAGATGAGTTTGGTGTAACACTTACTGAATTACAATTAAAAGAATGGGAAGACGATGAAGGTAATAAATACTCAGAAGAAGTAGAAGTGCCAATTCCTAACCCAGATTATGTTGAATACGAAGACGAATATATTCCACGTTCAGAACGTCCTGAATGGAATGTTGTAGGTTTAGTAGGACAAGTATTCACAAGATTTAAAGGTGAGTTAAAACCTAACGATTATATTAAAGCTGAAAATGGTGTAGGCGTTCGTGATAATGTGAACGGGCATTATAGAGTGTTAGAAATTACGACACCATACAGTACAGAAAAAGGATATGGCGTAGCAGTCGTATTAGTAAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e08c5e2d5b53b646772b04a88d17309820ca4f70ff41cb5ce2609002c9fe4bba
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3341
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of vB-SscS-F1 Ji,Y. 2019-07-03 — GenBank