Protein

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Genbank accession
WYA84516.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MAKPIYYPDWAVETVTLPGTQNLNKIRPKEIIRTVGMDYGQIMTCEEMNWILNNNGLWIRYLVDEFLPTLPNTYLPLVGTKITMAGDATGEVTWNGNAAVTLSIQVVDNSHNHLSSNITDATSTTVTPNVLVKRDGGGAIYGGDIYVNGTSTSDPATIFFKNFAGQTNGEISSEYNNGGHLYMYRRNPTNGNVSCAVRLYDGGYVLIDNPRSNSGQDTGNGNALVRLDYLNSRLSSLQNTLQTNINSVQNNLNNVNNNLNSRIDNVNSNLQNQISNNYNYANGNFVRDIRYTSQGVYYPPGNEVSWTYVCSSGYVLSGIIVQETGRSSADNIGGVYFKRLQRNVNGNWYDIGG
Physico‐chemical
properties
protein length:353 AA
molecular weight: 38914,55890 Da
isoelectric point:5,42036
aromaticity:0,09632
hydropathy:-0,44136

Domains

Domains [InterPro]
DC_0413
STR
1–350
DC_0413
Coil
Unmapped
238–276
Coil
WYA84516.1
1 353
Architecture
STR
STR 1-350 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYA84516.1
1 353
Domain Start End Length (AA) Confidence
N-terminal 1 240 240 0,5962
Central domain 241 342 103 0,2983
C-terminal 343 353 10 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-240
Central
241-342
C-terminal
343-353

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PsgM04F
[NCBI] 		3088886 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas syringae pv. garcae
[NCBI] 		251653 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYA84516.1 [NCBI]
Genbank nucleotide accession
OR584014.1 [NCBI]
CDS location
range 146127 -> 147188
strand +
CDS
ATGGCGAAGCCAATATACTATCCTGATTGGGCTGTAGAAACAGTTACCCTCCCAGGAACACAAAACTTAAACAAGATTCGACCTAAAGAAATTATTCGTACCGTGGGTATGGATTATGGTCAGATCATGACTTGTGAAGAAATGAACTGGATACTCAACAATAACGGGCTATGGATTCGTTATCTGGTTGACGAGTTTCTTCCAACATTACCAAATACATATCTTCCTCTGGTTGGTACTAAAATAACAATGGCAGGGGATGCAACAGGTGAAGTAACCTGGAACGGAAATGCAGCAGTAACGCTTTCTATCCAAGTTGTAGATAACAGCCACAACCACTTATCTTCAAACATCACAGATGCAACAAGCACTACAGTAACCCCTAACGTGTTGGTTAAACGTGATGGCGGCGGTGCTATCTATGGTGGAGATATTTATGTAAATGGTACATCTACTTCAGATCCTGCTACTATATTCTTTAAAAACTTCGCAGGTCAAACCAACGGTGAAATCTCTTCCGAATATAATAACGGAGGACACCTTTACATGTATCGCAGGAACCCTACCAATGGTAACGTATCCTGTGCAGTACGTTTGTATGATGGTGGTTATGTCCTGATTGATAATCCACGATCTAATAGTGGACAAGACACTGGGAACGGTAATGCTCTGGTTCGTTTAGATTACTTGAACTCACGTTTAAGCTCTTTACAGAACACCTTGCAAACGAATATTAACTCTGTTCAAAACAACCTGAACAACGTTAACAACAACTTGAACTCACGTATTGACAACGTGAACAGTAACTTGCAAAACCAGATCAGTAACAACTATAACTATGCGAATGGTAACTTTGTTCGTGACATACGTTATACCAGCCAAGGCGTATATTACCCACCAGGTAACGAAGTGTCTTGGACATACGTTTGTTCTTCCGGCTATGTTCTTTCTGGTATTATTGTCCAGGAAACAGGCCGTAGTTCTGCGGATAACATTGGTGGTGTTTACTTCAAACGTCTCCAGCGAAACGTGAACGGAAACTGGTACGATATTGGAGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2d2e97ce404410439a96040dfacfb046c13c094995807c1595803c3d609b9989
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7146
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50