Protein

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Genbank accession
YP_010667506.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPDTVLIPKIYFGTNATPVFDRFLPAVQMNGSKTISGRVSEGTVPKGGYQMFLLIHGSQIPIAQTTTSSIGEYSFTGLRDDVMYDVLAFDPVSKWEAKVSSKRIAG
Physico‐chemical
properties
protein length:106 AA
molecular weight: 11548,12940 Da
isoelectric point:8,00570
aromaticity:0,10377
hydropathy:-0,00849

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas maltophilia phage vB_SmaM_Ps15
[NCBI] 		3071007 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010667506.1 [NCBI]
Genbank nucleotide accession
NC_070951.1 [NCBI]
CDS location
range 16560 -> 16880
strand +
CDS
ATGCCAGATACCGTCCTGATCCCGAAGATCTACTTCGGCACAAACGCAACTCCAGTCTTTGATCGGTTTCTGCCCGCCGTCCAGATGAATGGGTCGAAGACGATCTCAGGACGTGTGAGCGAGGGAACAGTTCCCAAGGGCGGCTATCAGATGTTCCTGCTGATCCATGGGTCTCAGATTCCTATTGCACAAACGACGACAAGCTCTATCGGTGAATACTCGTTCACCGGCTTGCGCGACGATGTCATGTATGATGTCCTTGCATTTGACCCAGTAAGTAAGTGGGAAGCGAAGGTATCATCGAAACGAATTGCGGGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
77c0fda777accf14523d3c52b715c4e3ed2a57a90d7df5d5b956e39a7239509b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5358
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophage vB_SmaM_Ps15 infective to Stenotrophomonas maltophila clinical ocular isolates Damnjanovic,D., Vazquez-Campos,X., Elliott,L., Willcox,M. and Bridge,W.J. 2020-06-11 — GenBank