Protein

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Genbank accession
YP_009595669.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTVNVNKIAERTGTNPISVKDIANKVTLAASDGASKIGFGSGTVADELVKIKDTLVTLEANIWNYASLITEKPSLLDPTTWDWTPAFQAAANQGGSLYVPSSTYIISHVQVPKSFFIHAAAGTVFFQKNNTIVAKTHWTPGVGMFELSTDGISFGVDGFWTFDGNSANQVQIEPAGTFVKCMPFNPATNTKPTTIELHNGTFINGSYSYVIARGDALLRRFVTKVHLHNCTMYDTLYGVGKGDPATPSALGFSPTYVMALDYVILTTHNLRMFFEKPVSLGKYAATGVLGTYYGQDYANSGQALIMLEGITYCKGMGRGGVNWDGDPLGLNGIGVIDVYGNGDTLHVEHVVAEDCHVQVIRAKASLNKFHVGKFDLNNCDGGIQVSPSSTGPATTSVYIGPGEATACAVPIVEVTGTTTSDTIQKAVINGVFVKGGTNPNARTAVGSIHVRNVIDVAINDVTVRNCPLYGISAVDITRLSITNPAVRNVVGGVGIWISGGVDIDIKGGTVASATAGAAINMASVTGDIRVDHVKTSGTKDYSILINSASAKSVVIVNCRAETVSDLSRGYYSAVGFDLLAGNKIISGVTTPWVTPAGFRNIIRDNSWDPYLGWGGAAAPTTGTYNRGDILLNQFPTSGTPTGFRCTVAGSPGTWEAFT
Physico‐chemical
properties
protein length:659 AA
molecular weight: 69507,75040 Da
isoelectric point:6,35479
aromaticity:0,08801
hydropathy:0,07117

Domains

Domains [InterPro]
IPR012334
STR
80–244
IPR012334 IPR012334
IPR011050
STR
81–596
IPR011050
DC_1462
STR
100–659
DC_1462
YP_009595669.1
1 659
Architecture
STR
STR 80-659
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009595669.1
1 659
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9745
Central domain 85 608 525 0,9958
C-terminal 609 659 50 0,9838
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-608
C-terminal
609-659

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage pf16
[NCBI] 		1815630 Uroviricota > Caudoviricetes > Chakrabartyvirus >
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009595669.1 [NCBI]
Genbank nucleotide accession
NC_041881.1 [NCBI]
CDS location
range 148703 -> 150682
strand +
CDS
ATGTCAACAGTTAACGTCAACAAAATCGCTGAGCGGACCGGCACAAACCCGATCAGCGTGAAGGACATTGCCAACAAGGTTACTTTGGCTGCGTCTGATGGTGCATCAAAGATCGGTTTCGGTTCAGGCACCGTAGCAGATGAGCTGGTTAAAATCAAGGATACCTTGGTAACGCTTGAGGCGAACATCTGGAACTATGCGTCGCTCATCACAGAAAAGCCTTCATTGCTCGACCCTACCACTTGGGACTGGACTCCAGCTTTCCAAGCTGCTGCCAACCAGGGTGGGTCACTGTACGTCCCATCGTCGACTTACATCATCAGTCACGTACAGGTGCCTAAGTCGTTCTTCATCCACGCAGCTGCAGGCACTGTGTTTTTCCAGAAGAACAACACCATTGTAGCCAAGACTCACTGGACGCCTGGCGTTGGTATGTTTGAGCTGTCGACTGATGGGATCAGCTTTGGCGTTGATGGTTTTTGGACGTTTGACGGTAACTCGGCAAACCAGGTTCAAATTGAGCCAGCAGGTACGTTCGTCAAGTGCATGCCGTTCAACCCTGCTACCAACACGAAGCCGACCACCATTGAACTCCACAACGGTACCTTCATCAATGGCTCTTACAGCTATGTGATTGCGCGTGGTGATGCACTTCTGCGTCGGTTCGTGACAAAGGTCCACCTGCATAACTGCACCATGTATGACACCCTCTACGGTGTCGGTAAGGGTGACCCTGCTACTCCGTCGGCTCTTGGGTTCTCGCCTACCTATGTCATGGCTCTCGACTATGTGATCCTGACCACGCACAACCTGCGTATGTTCTTCGAGAAGCCGGTCAGCCTTGGTAAGTACGCAGCCACTGGTGTTCTGGGCACCTACTACGGTCAGGACTACGCCAACTCGGGCCAAGCACTGATCATGCTCGAAGGTATCACCTACTGCAAAGGCATGGGTCGGGGTGGTGTGAACTGGGACGGCGATCCACTGGGTCTGAACGGCATTGGCGTAATCGACGTCTACGGCAACGGTGATACTCTTCACGTTGAGCACGTTGTAGCTGAAGACTGCCACGTACAGGTCATCCGTGCAAAGGCATCGCTGAACAAGTTTCACGTTGGCAAGTTCGACCTGAATAACTGTGATGGCGGTATCCAGGTGTCTCCGTCGAGCACTGGTCCTGCAACTACCAGCGTTTACATCGGTCCAGGTGAAGCGACTGCATGCGCTGTGCCTATTGTTGAAGTAACCGGCACCACTACTTCTGACACCATTCAGAAGGCGGTTATTAACGGCGTATTCGTTAAGGGCGGAACAAACCCCAACGCTCGTACCGCTGTAGGCTCTATCCACGTGAGAAACGTGATTGACGTGGCGATCAACGACGTCACTGTGCGGAACTGCCCTCTGTACGGTATCAGTGCAGTTGACATCACTCGACTGTCCATCACAAACCCTGCCGTTCGAAACGTGGTTGGCGGTGTTGGTATCTGGATTTCAGGTGGTGTTGACATTGATATCAAAGGCGGTACTGTTGCAAGTGCAACAGCTGGTGCAGCCATCAACATGGCAAGCGTCACGGGTGATATCCGTGTTGACCACGTTAAGACTTCGGGCACAAAGGACTACTCGATTCTCATCAACAGCGCTTCAGCCAAGTCTGTCGTGATTGTGAACTGCCGAGCGGAGACTGTGTCCGACCTCAGCCGTGGTTATTACTCAGCTGTCGGGTTTGACCTGCTGGCGGGTAACAAAATCATCTCGGGCGTCACTACTCCGTGGGTCACACCAGCTGGCTTCCGGAACATCATTCGTGACAACTCGTGGGATCCATACTTGGGTTGGGGTGGTGCAGCTGCTCCTACTACAGGTACCTACAACCGAGGCGACATCCTGCTCAACCAGTTCCCAACATCAGGGACACCAACTGGTTTCAGGTGCACCGTTGCAGGCTCACCTGGTACATGGGAAGCCTTCACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a60046708fb95f6a5e3a035fbda249cc2a6e0e58ac1b728ca8d19692812186d7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7496
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of pf16 and phiPMW: Two novel phages infecting Pseudomonas putida PpG1 Magill,D.J., Krylov,V.N., Shaburova,O.V., Allen,C.C.R., McGrath,J.W., Quinn,J.P. and Kulakov,L.A. 2017-09-06 — GenBank