Protein

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Genbank accession
WYW00671.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAQQINGWSSETQGLQKRPPTKFVKRFGASGSWGAKPLVHLVNRDAVEQYYMVFTGSGVAVVDLNGNSYAVRGYDGYANCADPRGDLRLITVADYTFIVNRRTTVQMGSETTHAGYRAPATRALVACRGGQYGRTCIVEVLIDVTWVTLATLKLPSGVGEPSQIEPMVAQVDAQNMIQAMVAQVNTNGAPWKISAAEGPGYMLLHRDDGGSFQGIRTKDGFADQLINGFLYQVQSFNKLPAQAPEGYLVEITGEATRSGDNYWVRYDGAGRVWKETVKPGIIAGFNRYTMPRGLVRAADGQFDWKVLDWSNRNSGDDETNPLPSFIDGTINDVFFFRNRLGFLSGENVIMSRSSRYFNFFPPSVASLSDDDPLDIAVSHNRVSILKYAVPFSEQLLLWSDQAQFVLSSQGILSPKTVELNLTTEFDVQDTARPFGIGRGVYFSAPRAAFTSLKRYYAVQDVSDVKNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGAQDVVYIYKFLYMAEEIAQQSWSHWEFGTGINILATASIGSYMYILMDRPEGIVLERVEFTAFTKDFHAEPYRTYMDGKIQAVCDNYDIDLNISTFNVAALYGGVPGADSAYWTIDTEGVSQLHEAPAGGWGANPLITLTGDQRGRTYIIGRQYTFVYEFSKFLIKQTADDGSTATEDIGRLQLRRAWLNYENSGSFEISVNNGSRDRSNDYVYTMAGGRIGSEVVLGELNLGTGQYKFPVAGNAQRQRVTIVSDTPSPLNVIGCGYEGNYVRRSSGI
Physico‐chemical
properties
protein length:805 AA
molecular weight: 88826,45550 Da
isoelectric point:5,38324
aromaticity:0,11304
hydropathy:-0,25379

Domains

Domains [InterPro]
IPR058003
TTP
1–805
IPR058003
WYW00671.1
1 805
Architecture
TTP
TTP 1-805
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW00671.1
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9926
Central domain 144 342 200 0,1377
C-terminal 343 805 462 0,1891
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-342
C-terminal
343-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Vasula
[NCBI] 		3132639 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW00671.1 [NCBI]
Genbank nucleotide accession
PP496435 [NCBI]
CDS location
range 23872 -> 26289
strand +
CDS
ATGGGTCTGGTTAGTCAGTCCGTAAAGAACCTGAAGGGTGGCATTAGCCAACAGCCGGACATCCTCCGGTTTCCCAATCAGGGTGCGCAACAAATCAACGGCTGGTCGAGTGAGACCCAAGGTCTTCAGAAGCGACCGCCAACCAAGTTCGTTAAGCGCTTCGGTGCATCTGGTTCGTGGGGCGCTAAGCCTCTCGTCCATTTGGTCAACCGTGATGCTGTCGAGCAATACTACATGGTCTTTACAGGCAGCGGTGTGGCCGTGGTGGACCTCAATGGGAACTCGTATGCAGTGCGTGGCTATGATGGCTATGCGAACTGTGCGGACCCACGAGGTGACCTGCGGCTGATCACTGTGGCCGACTACACGTTCATCGTGAACCGTCGCACGACTGTGCAGATGGGATCTGAGACGACTCATGCTGGTTACCGTGCGCCTGCTACCCGTGCCCTTGTGGCGTGCCGTGGTGGTCAGTACGGTCGGACCTGCATCGTGGAAGTCCTGATCGACGTAACGTGGGTCACGCTGGCAACCCTTAAGCTGCCTTCGGGTGTCGGTGAGCCGTCCCAGATTGAGCCGATGGTTGCTCAGGTGGATGCCCAGAACATGATCCAAGCTATGGTCGCTCAGGTGAACACCAACGGTGCGCCTTGGAAAATCTCTGCTGCTGAAGGTCCCGGCTATATGCTGCTGCACCGTGATGATGGTGGATCGTTCCAAGGTATCCGCACCAAGGACGGCTTCGCTGACCAGTTGATCAACGGCTTCCTGTATCAGGTTCAGTCGTTCAATAAGTTGCCCGCTCAGGCCCCTGAAGGTTACCTCGTGGAAATCACCGGGGAAGCCACACGCTCAGGCGACAACTACTGGGTCCGTTACGATGGAGCTGGCCGTGTCTGGAAGGAGACCGTTAAGCCGGGGATTATTGCTGGCTTCAATCGGTACACCATGCCCCGTGGCCTTGTCCGTGCGGCAGACGGTCAGTTCGATTGGAAGGTTCTCGATTGGTCCAACCGCAACAGCGGCGACGACGAGACCAACCCGCTGCCCAGCTTCATCGACGGTACGATCAACGACGTGTTCTTCTTCCGCAACCGCTTGGGCTTCCTGAGCGGCGAGAACGTGATCATGTCCCGGTCGAGCCGGTACTTCAACTTCTTCCCACCAAGCGTGGCGAGCCTGTCTGATGATGACCCGCTGGACATTGCCGTATCGCACAACCGTGTGTCGATCCTCAAGTACGCCGTGCCGTTCTCCGAACAGTTGCTGCTGTGGTCTGACCAAGCTCAGTTCGTGTTGTCCTCTCAGGGAATCCTGTCTCCCAAGACGGTAGAGCTGAACCTGACCACTGAGTTCGACGTACAGGACACCGCCCGACCTTTCGGGATTGGCCGTGGCGTGTACTTCTCGGCACCTCGTGCAGCCTTTACGAGCCTCAAGCGTTACTACGCTGTGCAGGACGTATCGGATGTTAAGAACGCCGAGGACGTATCCGCTCACGTTCCAAGCTACATTGAGAACCGGGTCTTCAACATCCACGGCTCAGGGACAGAGAACTACGTGACCCTGCTGTCGGATGGTGCCCAAGATGTCGTGTACATCTACAAGTTCCTCTATATGGCCGAAGAGATCGCGCAGCAATCGTGGAGTCACTGGGAGTTCGGCACTGGGATCAACATCTTGGCCACGGCCTCGATTGGTTCCTACATGTACATCCTCATGGATCGCCCTGAAGGGATCGTATTGGAGCGCGTGGAGTTCACCGCATTCACCAAGGACTTCCATGCTGAGCCTTATCGGACCTACATGGACGGCAAGATTCAGGCAGTGTGCGACAACTATGACATCGACCTGAATATCTCGACGTTCAACGTAGCGGCCCTTTATGGTGGCGTACCGGGCGCAGACAGTGCGTACTGGACCATCGACACCGAGGGCGTCAGTCAGCTACACGAGGCCCCTGCTGGTGGCTGGGGAGCGAACCCACTGATTACCTTAACGGGTGACCAGCGTGGCCGTACCTACATCATCGGGCGTCAGTACACGTTCGTTTACGAGTTCTCCAAGTTCCTGATCAAGCAGACCGCTGACGATGGGTCTACTGCGACAGAGGACATTGGGCGACTCCAGTTGCGACGTGCATGGCTGAACTATGAGAACTCTGGGTCTTTCGAGATCAGCGTTAACAACGGTAGCCGTGACCGCTCCAACGATTATGTCTACACGATGGCCGGTGGCCGCATCGGTTCTGAAGTTGTCCTTGGCGAGCTGAACCTCGGCACAGGTCAATACAAGTTCCCGGTGGCAGGTAACGCCCAGCGCCAGCGAGTGACAATCGTGAGCGACACCCCAAGCCCGCTGAACGTGATCGGCTGTGGATACGAAGGTAACTACGTGCGCAGATCCAGCGGAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dfa9d4201496c649db3f8ba2e16feb243fc45df2af2e176bc1b7b8b18dcce061
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3041
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank