Protein

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Genbank accession
WRQ13385.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVTGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPYAPSSNLLEGRGYLINNTTGTSTVVLPSPTRIGDSVTICDAYGKFATYPLTVSPSGNNLYGSTEDMAITTDNVSATFTWSGPEQGWVITSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFSPSLPASTELQVIEYTPIQLGNGGGSGSSTITWVYNGGSAIGGETEITLDIVVDDVPAIDINGSRQYKNLGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDHTLREVARVTNVKDTEVVYFSVGAVLSGYKVIYDKVTQRSYFIPELPTGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYVTLAGTFDSGAVINTKNELLTHTDGKYRWDGTLPKTVAAGSTPATTGGVGSGAWLSVGDASLKSNLNKPNGLSYIGTVSSVSELSSIAGLIGDSIILDSYVDGFNLGGGVMVAVNSDTVVDNIVTFQGNGVVWKRKLFNGVADVYEAGYTGTGDLAIFINKINAVGFDCIVPVSGEITTPIIFDIAKGALIGKNKCTLIESASATGDYYLTIVNTDTDYTNRDVINATALMTGVSFVGKGTRKLAIGGSTSGEVSELRISNCGFISTAGIEFLDNAYRILFDKCTLSRSFTNSVIFNSPANSGEVIKFNHCWMVDNGGPFTFKNGQFIFDSCSLPAGKKSGYFDPVVALSDNATTVFTNGNIEYQPGQSFVGFTVDGSSRLSISDSTILLPNDYSTVPIVNNGDGVVSLNNCSLPLYGSTTIATGFATRQLIGGLSKKIMSRGCYPRAGFITSNWNLGCIVSPYINSVSNGSGQFENISNWTLSQTGTDVVTVTTGNDVPNDLMFSTSFVLSVPTVGAAANFTQTIIDCEPGRYFQLGFWAKNTTTTLASIRFLDQQGNAVADSIGYNIPVGNTFNFYALVDCVPPGAYKAEINFNVSSIVGGIAIHNVIYGLI
Physico‐chemical
properties
protein length:1036 AA
molecular weight: 109592,21070 Da
isoelectric point:4,52429
aromaticity:0,09459
hydropathy:0,05029

Domains

Domains [InterPro]
DC_1946
ATT
1–1016
DC_1946
G3DSA:3.30.2020.50
ATT
335–420
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 G3DSA:2.60.120.260
IPR040775
RBD
416–481
IPR040775
WRQ13385.1
1 1036
Architecture
ATT
STR
ATT 1-1016 | STR 1017-1029 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WRQ13385.1
1 1036
Domain Start End Length (AA) Confidence
N-terminal 1 577 577 0,9987
Central domain 578 886 310 0,9940
C-terminal 887 1036 149 0,9840
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-577
Central
578-886
C-terminal
887-1036

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenAc-pSK20
[NCBI] 		3093916 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WRQ13385.1 [NCBI]
Genbank nucleotide accession
OR729889.1 [NCBI]
CDS location
range 145425 -> 148535
strand -
CDS
ATGGCCAACAAACCAACACAGCCTCTTTTCCCTTTGGGTTTAGAAACTTCTGAGTCTTCGAACATAAAAGGCTTCAACAACTCCGGCACTATTGAGCATTCCCCTGGTGCCGTAATGACATTTCCTGAAGATACTGAAGTTACAGGTCTTCCATCTTCTGTACGTTACAATCCTGATAGCGATGAATTTGAAGGTTATTACGAAAACGGTGGTTGGTTGTCTTTGGGGGGAGGTGGAATACGCTGGGAAACGCTCCCTTACGCTCCCTCTAGCAATTTGTTAGAAGGTCGTGGTTATCTCATTAATAATACCACAGGGACATCTACAGTGGTTCTCCCTTCCCCTACGCGTATTGGGGATTCCGTTACTATTTGTGATGCTTATGGGAAATTTGCCACTTACCCATTGACCGTGTCTCCTTCTGGAAATAATTTGTATGGCTCCACTGAAGACATGGCTATAACAACTGATAACGTATCAGCAACGTTCACTTGGTCTGGACCTGAACAAGGTTGGGTTATCACATCCGGCGTCGGTCTTGGCCAAGGCCGTGTCTACAGTCGTGAAATCTTTACACAAATTTTGGCGTCTGAAACAAGTGCTGTTACTCTCAATACTCCACCAACAATCGTGGACGTGTATGCTGACGGAAAACGTCTTGCGGAATCCAAATATTCACTAGATGGAAATGTAATCACTTTCAGTCCTTCTTTGCCAGCCAGCACAGAACTTCAGGTGATTGAATATACTCCTATTCAATTGGGTAATGGCGGTGGTTCTGGTTCTTCTACAATTACCTGGGTCTATAATGGGGGTTCAGCGATTGGCGGTGAAACCGAAATCACGTTAGACATCGTTGTTGATGATGTTCCGGCCATTGATATAAACGGAAGTCGCCAGTATAAAAATCTGGGGTTCACATTCGATCCATTAACCAGTAAAATCACTCTTGCGCAAGAACTGGATGCAGAGGATGAAGTTGTTGTAATTATCAATGGAACGCCAAACATCTATAATCAAATTGATCATACTTTGCGGGAAGTGGCTCGTGTAACCAATGTTAAAGATACAGAGGTCGTTTATTTTAGTGTTGGTGCTGTGTTAAGTGGATATAAAGTTATCTATGATAAAGTAACACAGAGATCATATTTTATTCCAGAGTTACCGACTGGAACCACGGCAGTCAGCCTTAGTTCTTCGGCTGTGCTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTATCTCGTGAAGAATATGTTACCTTGGCTGGGACATTTGATTCTGGTGCTGTCATCAATACTAAAAATGAATTACTCACCCATACTGATGGAAAGTATCGTTGGGATGGTACACTTCCTAAAACTGTAGCTGCTGGCTCAACTCCAGCAACAACTGGAGGCGTTGGTTCGGGAGCGTGGTTGAGTGTTGGTGATGCATCTCTGAAAAGTAATTTAAATAAACCAAATGGCTTATCTTATATAGGAACCGTATCATCAGTTTCTGAATTATCATCAATAGCAGGATTAATTGGTGATTCTATAATTCTTGATTCGTATGTTGACGGGTTTAATCTTGGTGGCGGTGTTATGGTGGCTGTTAACTCAGATACTGTGGTGGATAATATCGTTACTTTCCAAGGCAATGGTGTCGTTTGGAAAAGGAAATTATTCAACGGTGTGGCGGATGTGTACGAAGCTGGTTATACTGGAACCGGAGATTTGGCTATATTCATCAATAAAATAAATGCCGTCGGATTTGACTGTATAGTCCCTGTTTCTGGTGAGATAACAACACCGATTATTTTTGATATAGCAAAAGGTGCACTTATTGGAAAAAATAAATGTACTCTAATAGAATCTGCATCTGCAACGGGCGACTACTATCTAACCATCGTTAATACAGACACGGATTACACCAATAGAGATGTAATTAACGCAACTGCGTTAATGACTGGAGTGTCATTTGTTGGAAAAGGGACCAGGAAATTGGCGATCGGTGGTTCTACCAGTGGAGAAGTCTCAGAGTTAAGAATATCTAATTGCGGGTTTATCTCAACTGCCGGAATTGAGTTTCTTGATAATGCATATCGTATTCTTTTTGATAAATGTACGTTGTCCAGAAGTTTTACAAATTCTGTTATTTTCAATTCACCAGCGAATTCCGGTGAGGTTATAAAATTTAATCATTGTTGGATGGTTGACAACGGTGGACCTTTTACATTCAAGAATGGACAATTTATATTCGATAGCTGCTCTCTACCAGCAGGTAAAAAATCAGGATATTTTGACCCTGTTGTTGCGTTATCAGATAACGCAACAACAGTTTTCACAAATGGCAACATTGAGTACCAACCTGGTCAGAGTTTCGTTGGGTTTACTGTAGATGGTAGTTCACGATTAAGCATCAGTGATTCGACAATACTGTTGCCGAATGATTATTCTACAGTACCTATTGTAAACAACGGGGATGGGGTTGTTAGTCTAAATAATTGCTCGTTACCTCTCTACGGAAGCACAACGATTGCTACTGGGTTTGCCACACGGCAGTTGATAGGTGGGTTGAGTAAAAAAATAATGTCCAGAGGTTGCTATCCACGAGCAGGGTTTATAACAAGTAACTGGAATTTAGGGTGCATTGTAAGCCCTTATATTAATAGTGTTAGTAATGGCTCAGGGCAGTTTGAAAATATATCTAACTGGACACTCTCACAAACTGGAACAGACGTTGTCACTGTTACTACAGGAAACGATGTTCCTAACGATTTAATGTTTTCAACTTCTTTTGTCTTATCCGTACCAACAGTGGGTGCAGCGGCTAATTTCACCCAGACAATCATTGACTGTGAGCCTGGGCGTTATTTTCAACTTGGTTTTTGGGCTAAAAATACAACAACCACCCTGGCATCAATTAGATTCCTGGACCAGCAAGGAAATGCTGTCGCGGATTCCATAGGATATAACATCCCAGTAGGAAACACGTTCAACTTTTATGCTTTGGTGGATTGCGTTCCGCCAGGAGCTTACAAAGCTGAAATTAATTTCAATGTTTCCTCTATTGTTGGTGGTATCGCAATACACAATGTCATTTACGGATTGATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3735b00719c82790ca2d1fd42ad5fa73468ee9236165f001fc75ab328922b30d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7422
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Salmonella virus vB_SenAc-pSK1 Kim,Y., Park,S.Y. and Kim,J.H. 2012-09-15 — GenBank