Protein

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Genbank accession
AMM43477.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTTITNLPETSKVNGSDYLVLDQPDKTVKSTVSKFLTDTGVVLATQLKDTDGADLIQSSNGNTVQEELNNNLLNDREQWSRSLAEAGLTLVDGSFEEGATVNSETDAVWHIAGGQCYTWGGEFPKTASSGSTPEAASGIGLGEWVSVGDASLRSDLLKDDGYTLIPSVQIQQWRNEGDIRGWGAVNGGFNDSAILAALNSDSPSVKLGGRGFVSKLRDTIIHKSNKVMHSGSLNFQFDGGTQQEKSGILMANISNAKVIDVDITGTLDGGIRGYGGSNIVIDGVNVHDIGISMLSGECGIGIWFGDYANYDVQTDGLLIQNCNIKNIGGVGMQRGDGILVYNAKNFKVRHNTIVTTNRMGIAAGSDTRQFEIHGNYIGDTLLAGIDIEPDEGHTASNFKVYNNNIIGFAARYFIQGAGVGQTFGIDTHANTWYGKVYKNILSAGQYGTEAFHIGNHADEIEITDNDLIGGAVVIPLFIKTYDGSGSKRIKINRNRAKGTCKSFADVYMSEDVYISENVFSGDGSNDSYFLRASTIAGLNVDYNRSSNTTNFIKSGDAGNTSNVKVTNNNISTLSDGIDMLTSGSMTGFIATGNTILCPASNKGISLEVTGSGSISDISLRGNIIYNATTKIYVSPAATGWDMLTKNTRFDLSGVQNGTQLFELSRNRVTQFLNGIWVDS
Physico‐chemical
properties
protein length:680 AA
molecular weight: 72655,69000 Da
isoelectric point:4,88460
aromaticity:0,07941
hydropathy:-0,23412

Domains

Domains [InterPro]
DC_0311
STR
1–674
DC_0311
G3DSA:2.10.10.80
ATT
89–159
G3DSA:2.10.10.80 IPR012334 IPR011050
IPR040775
RBD
93–150
IPR040775 IPR011050 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
247–408
IPR039448
IPR006626
Unmapped
254–276
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
AMM43477.1
1 680
Architecture
STR
ATT
STR
STR 1-88 | ATT 89-159 | STR 160-674 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMM43477.1
1 680
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,9944
Central domain 194 651 459 0,9929
C-terminal 652 680 28 0,9441
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-651
C-terminal
652-680

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage ECGD1
[NCBI] 		1784948 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMM43477.1 [NCBI]
Genbank nucleotide accession
KU522583.1 [NCBI]
CDS location
range 89509 -> 91551
strand +
CDS
ATGTCAACTACAATTACTAATTTACCCGAAACATCAAAAGTTAATGGTTCTGATTACCTGGTTTTAGACCAACCTGATAAGACTGTTAAAAGCACAGTTTCCAAATTTCTTACTGACACTGGGGTGGTTTTAGCCACCCAGTTGAAAGATACAGATGGAGCAGATTTAATACAATCCTCAAATGGTAATACTGTTCAGGAAGAGTTGAATAACAATCTTCTTAATGATCGTGAACAGTGGAGTCGTAGTCTTGCCGAGGCTGGGTTAACTCTTGTTGATGGTAGCTTTGAAGAAGGTGCAACAGTTAATAGCGAAACGGACGCTGTATGGCATATCGCTGGTGGGCAGTGCTATACGTGGGGTGGCGAATTTCCTAAAACTGCCTCCTCTGGCTCAACTCCAGAGGCTGCTAGTGGTATTGGTCTGGGCGAGTGGGTTAGTGTTGGTGATGCTTCATTAAGGAGTGACTTATTAAAAGATGATGGATACACACTTATTCCATCAGTGCAAATTCAGCAATGGAGGAATGAGGGTGATATTCGAGGATGGGGTGCTGTAAATGGTGGATTCAATGATTCAGCTATTTTGGCTGCACTAAACTCTGATTCACCAAGTGTAAAGCTAGGTGGGCGCGGATTCGTATCAAAACTCCGTGATACTATTATCCACAAAAGTAATAAAGTGATGCATAGCGGGTCATTAAACTTTCAATTTGATGGCGGAACTCAGCAAGAGAAATCCGGGATACTTATGGCTAACATCTCGAACGCCAAAGTGATTGATGTTGATATAACAGGCACCCTGGATGGAGGAATTCGTGGGTACGGTGGCAGCAATATCGTTATAGACGGCGTGAATGTTCACGATATTGGAATTTCAATGCTATCCGGTGAGTGCGGCATAGGAATATGGTTCGGTGATTATGCAAACTACGATGTACAGACGGATGGGCTGTTAATTCAAAATTGTAATATCAAAAATATTGGTGGTGTAGGGATGCAGCGTGGTGATGGCATCCTGGTTTATAACGCGAAAAATTTCAAGGTAAGGCATAACACCATCGTTACAACCAATAGGATGGGTATTGCAGCCGGAAGTGATACTAGGCAGTTTGAGATTCATGGAAACTACATAGGTGATACGCTATTAGCTGGTATAGATATTGAACCCGACGAAGGTCACACCGCTTCAAATTTCAAGGTATATAATAACAATATTATCGGATTTGCTGCACGATACTTCATTCAAGGCGCTGGTGTTGGTCAAACCTTTGGCATAGATACTCATGCCAATACCTGGTATGGCAAAGTGTACAAGAACATATTGTCGGCAGGTCAGTATGGAACAGAAGCATTTCATATAGGAAACCATGCGGATGAGATTGAAATTACGGATAACGACCTGATCGGCGGTGCTGTTGTAATCCCATTATTCATCAAGACATATGATGGTAGCGGTAGTAAGCGCATCAAAATAAACCGCAACAGGGCAAAGGGAACATGTAAATCATTTGCAGATGTATATATGTCTGAAGATGTTTATATTTCTGAAAATGTATTCTCTGGCGATGGTTCTAATGATAGTTATTTCCTGAGAGCGTCAACAATAGCAGGGCTTAATGTTGACTACAACCGGTCAAGCAACACAACCAATTTCATCAAGTCTGGTGACGCTGGAAACACGTCAAATGTGAAGGTCACTAATAATAACATCTCTACCCTTTCGGATGGTATAGACATGCTAACGTCTGGTTCCATGACTGGTTTTATTGCTACTGGCAACACTATTTTATGCCCAGCATCCAACAAAGGAATCTCACTGGAAGTAACAGGTTCGGGTTCTATTTCAGACATTAGTCTCCGTGGCAACATAATTTATAATGCTACAACCAAAATATATGTATCACCTGCTGCCACGGGATGGGATATGTTAACCAAAAATACCAGGTTTGATCTGTCTGGAGTTCAAAATGGCACTCAGCTATTTGAACTATCAAGAAATAGAGTTACTCAATTTTTAAACGGAATATGGGTTGATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e71a192769f4b0412aea8642ce9f1d85fdd25799219581fe251fc108768d37cc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8080
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Bacteriophage ECGD1, Capable of Lysing Escherichia coli and Salmonella Fan,J. and Ma,J. 2018-03-02 — GenBank