Protein

View in Explore
Genbank accession
WPK18832.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
Protein sequence
MIRYNKEWKSPPLAQTPLPAPAASLNGDYYVVRGIMDAAQAHYEANNPQTSPVTFTPTNPTGQGNWIEILYYVDSNPNISGAKLVTYAFARIIPASIPSTGHDGLKNLATDADLTKPFASGVPMNQTALSDGDWIIITEDKNIRLRQSRTSISAASVLYDNTVMIANHRQFRTNAGTVQTSIDNVVIECLRRTGDSMYNDGTDGSGRFGVVYGSAAAPALTFNDVSIYDNGTIRTRFNRYGIQLPVLATIDNSVGVDGMIAYSNTERTFTISSWVLSGNYYTLTVTASNIVTAEIQEQVSPGVYTRVEVDSCSCSFTCSTWFL
Physico‐chemical
properties
protein length:323 AA
molecular weight: 35182,91390 Da
isoelectric point:5,08154
aromaticity:0,09598
hydropathy:-0,16285

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK18832.1
1 323
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,7724
Central domain 57 255 200 0,4072
C-terminal 256 323 67 0,9794
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-56
Central
57-255
C-terminal
256-323

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SD-6_S16
[NCBI] 		3096174 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK18832.1 [NCBI]
Genbank nucleotide accession
OR699182 [NCBI]
CDS location
range 907 -> 1878
strand +
CDS
ATGATTAGATACAATAAGGAATGGAAATCTCCACCTTTAGCACAAACTCCACTACCAGCACCAGCAGCATCACTAAATGGTGATTATTATGTTGTTCGTGGTATTATGGATGCCGCACAAGCCCATTATGAAGCAAATAATCCACAAACAAGTCCTGTTACATTTACTCCTACAAATCCAACTGGACAAGGTAATTGGATTGAAATTTTATATTATGTTGACTCTAATCCAAATATATCTGGTGCTAAACTAGTAACATACGCTTTCGCTAGAATTATTCCTGCATCTATTCCGAGTACTGGTCATGATGGTCTTAAAAATTTAGCAACAGATGCTGACTTAACCAAACCATTTGCTTCAGGTGTTCCAATGAACCAAACCGCACTATCAGATGGTGATTGGATTATTATAACTGAAGATAAAAACATACGTCTACGCCAGTCAAGAACAAGCATTTCCGCTGCTTCAGTATTATATGACAATACTGTAATGATTGCAAATCATCGTCAATTTAGGACAAACGCAGGGACCGTTCAAACATCCATAGATAACGTTGTGATTGAGTGTTTACGTAGAACTGGTGATTCCATGTATAATGATGGAACAGACGGCTCTGGGCGTTTTGGGGTGGTGTATGGAAGTGCAGCAGCACCAGCATTGACATTTAACGATGTAAGTATCTATGATAATGGAACTATAAGAACACGTTTTAATAGATATGGTATCCAATTACCTGTACTAGCTACTATTGATAACTCTGTTGGCGTTGATGGTATGATTGCATACTCCAATACCGAGCGTACTTTTACCATTTCATCTTGGGTCTTAAGTGGTAACTACTACACCCTTACTGTAACAGCCTCAAACATCGTCACAGCAGAGATACAGGAACAGGTTAGTCCTGGTGTCTATACTCGTGTTGAGGTCGATAGCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
da6d2f01fe806c74a290dc6188e8fe53569eb156b6996ad3b7817e7936b796c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2996
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence a group of lytic Salmonella phages Dlamini,S.B., Montso,P.K., Ateba,C.N., Mnisi,M.C. and Mlambo,V. 2023-09 — GenBank