Protein

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Genbank accession
QBQ72530.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADNLASFKVFCQGGLNTSRDVLSQGETQPGSAISLINYEPAVTGGYRKISGFSNDYGEVTGQANTPVLGVCVANGVNDGILACRMPQVGDDYLHYWDNATSAWVAVSVSAISPAPTMVGVTKVRFTKYNWGSPKILLTDGINPAATYDGTTYTQITHADAPSAPRLSHVFKNHMFLAGDPSENTNLYFSAPYDETSFAAADGAGVINVGFPIVAIKSFRDVLYIFGSNNIRKLAGDNISNFVLQEVTDDLGCLATDSVIEIGGDLLFLSQDGLRPVSGTDKIGDVNLETVSKDIQSIFTDIVFDIDLETLNAVVIRQKTQFRYFFGAADAQGIIGGFRQTPNGLQFEYSQMLGITATCADSGYIGQNEFVIHGDSTGKVHRQERGNDFDGENIFSLFQTPFFHMQDPEQRKVFYTVATYLRSEGDNELVMSALYDYEDVDTLSPTNFTLTTTGAAAYYNEALYNSTAIFDGNPAPVKRTNISGSGKSASFKFVTNDSNASHSIQGLVVTFGVGDRL
Physico‐chemical
properties
protein length:517 AA
molecular weight: 55889,49840 Da
isoelectric point:4,59216
aromaticity:0,10832
hydropathy:-0,11663

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72530.1
1 517
Domain Start End Length (AA) Confidence
N-terminal 1 368 368 0,8331
Central domain 369 506 139 0,1230
C-terminal 507 517 10 0,9223
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-368
Central
369-506
C-terminal
507-517

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-2
[NCBI] 		2559281 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacteraceae bacterium
[NCBI] 		1904441 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72530.1 [NCBI]
Genbank nucleotide accession
MK613344 [NCBI]
CDS location
range 38669 -> 40222
strand -
CDS
ATGGCTGACAATCTCGCCTCCTTCAAAGTATTCTGCCAAGGCGGTCTAAACACTAGCCGTGATGTGTTGTCACAAGGTGAGACTCAGCCTGGTTCAGCTATTTCTTTGATTAACTATGAACCTGCTGTTACTGGTGGCTATCGTAAGATTAGTGGCTTTAGCAATGACTACGGTGAAGTAACAGGTCAGGCTAATACACCAGTGTTAGGTGTCTGTGTAGCTAACGGTGTCAATGATGGTATCTTAGCTTGTAGAATGCCACAGGTAGGTGATGATTATCTGCACTATTGGGATAATGCTACATCAGCTTGGGTTGCAGTAAGTGTATCTGCTATCTCACCTGCTCCTACTATGGTAGGTGTAACTAAGGTAAGGTTTACTAAGTATAACTGGGGTAGTCCTAAGATACTTCTTACTGATGGTATTAACCCTGCAGCTACTTATGATGGTACAACCTATACGCAGATCACACACGCAGATGCACCCAGCGCACCTAGACTGTCACACGTATTTAAGAACCACATGTTCCTAGCAGGTGACCCTAGTGAGAACACGAATCTTTATTTTAGCGCACCTTACGATGAGACTAGCTTTGCTGCTGCTGATGGTGCTGGTGTTATTAACGTAGGCTTCCCTATCGTAGCTATCAAGTCTTTTCGTGATGTGTTATACATCTTTGGTAGCAACAACATTCGTAAGCTTGCAGGTGACAACATCTCTAACTTTGTACTACAAGAAGTTACAGATGACCTTGGATGCCTAGCTACAGACAGTGTGATTGAGATCGGTGGTGACTTACTATTCTTATCACAAGATGGTCTACGCCCTGTTAGTGGTACAGACAAGATTGGTGACGTTAACCTAGAGACAGTATCAAAAGACATTCAGTCTATCTTTACTGACATTGTGTTTGACATTGATCTTGAAACACTTAACGCAGTAGTAATACGACAAAAGACACAGTTCCGTTACTTTTTTGGTGCAGCAGACGCACAGGGTATTATTGGCGGTTTCAGACAAACACCTAACGGTTTGCAGTTTGAGTATAGCCAGATGCTAGGTATCACAGCTACTTGTGCTGACAGTGGCTACATAGGACAGAACGAGTTTGTAATTCACGGTGACAGTACAGGTAAGGTACATCGTCAAGAACGTGGCAATGACTTTGATGGTGAAAACATTTTTAGTTTATTTCAGACACCGTTCTTCCATATGCAAGACCCTGAGCAACGTAAAGTGTTTTATACTGTAGCTACATATCTACGTTCTGAAGGTGACAATGAGCTAGTTATGTCTGCTTTGTATGACTATGAAGATGTTGACACACTAAGTCCTACAAACTTTACATTAACAACTACAGGTGCAGCAGCTTACTATAACGAGGCTTTGTATAACAGCACCGCAATCTTTGATGGTAATCCAGCACCTGTTAAAAGAACAAACATATCAGGTTCAGGTAAGTCAGCATCATTTAAATTCGTAACTAATGATTCCAATGCATCACATAGTATTCAAGGTTTGGTGGTTACATTCGGAGTAGGAGACAGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9b3cf22c16783f9e46b39a789739ecffbeb1d22d62b6928af380dc7e1ec8e7f1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8784
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse, abundant and novel viruses infecting the marine abundant Roseobacter RCA lineage Zhang,Z.F., Chen,F., Chu,X., Zhang,H., Luo,H.W., Zhai,Z.Q., Yang,M.Y. and Zhao,Y.L. 2019 — GenBank