Protein

View in Explore
Genbank accession
URQ03501.1 [GenBank]
Protein name
long tail fiber distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,68
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAELRSTTAIGGNIVWHGGNLRFDPQGETIRYQGHKIYTEHDTPLPGELGNGGTTSAFTKAESDGRFAPIVAGGYVKKTGDTMSGKLTNTANEIEINGASPRLLLRDNVNSKNWYIMNSTDSFSIRENDVVTTRFRIDATAADFSVDSIDINMKTALRGFDDWLRINDQNEFTSGVYYGSSLLRTDGTLQIGNNGSTLSVNGSAFTYEGNNVFTEAYHPNADKWTSARTLTTTLTGDVSGSASMTIDGSANATVTVTATVANDSHTHDGRYYTEAESDARFANVTGDTFTGNVAISKAGARLSFNETLYATENSGINWITGANQNLELIHEISDVDINTDGGNGQALIIRDNGSTASVAGLEVQGEIFAKVNQRVFHDAYHPNADKWTAARTITLGGDLTGSVSIDGTSNVTLNASVPSLSNYPTFAEVGIRADQPNYLATGRTMSGVDTTVDWDTLTQGGFYYKLSQGTNRPSGFTGYWYVQNMTYGTTSNTTQVAYPYGLTGNVGTIAMRTRFSEAWEDWVYMYHTDYHPYADKWTTARSLSLGNELSGSVSIDGSSNVTLNASVDHIDNVLNINRVGESNPSIWLNNDTGETRGNIYWNRVDGSLQFRLNGSDGTTAENIISMYSDRTVFTDQIHTSTLVNSDNTEQGLLMFGGGTTRLGGSGASAIYFCPLGVNSNASNDFAASLNTSGVMSLNASSSTPLSVHRVEESSVPNVNIRFQGKSTDGNALGEAWYAGSFTNGAGFGIGTNADLSTASNRLFEVGSAGAVVRREGSGATSLTVEGTDPFLVFDQTDVGKYGYIGMDGSGADSLYVRTPDDSTRRSIYHESNKPTANDVVNNVISLDGLDATKFYPVVFDANNTAGYTCEFTLSVGSGTGSSPYNNNTITGVARGGGWSDHNAYYDLIVQKYVDSETNIHSIWEGTQGFTGVVIYVRGGQSINLRSNSRAQVYTSDYSFGGSVFPAGISNPLGAPTNANIFAYFSKSGRYTSSSATRYKLNTGEMNLNSGSNNGLFKIETDANYDSIIRMSEDGAAHGGFIHYLGATTNEFKIGTRQSDVDTTALTIPRGTSNVFVGGNLYANGGTVQLASKINLTYDSTRVLTVYNGNNSKSAWFGCRNSSYAHMETNATNGFYSYSKFNFGSDVDVLLNKNILLGGKRAFRNNEGAWLRLNPYADFSSGIYCGSSLLRTDGQITSGSWSGSNKSARVASNFYDSTWAGNGTAAFSVNNPDTVGAHWAFASFYNGSNIRSGIQILSNSEGRMRFYTNRRSKYVEINGGSVVATGNVTAYSDARLKENVKVIDNALNKVGELSGYTYDKRKSLDSDEFTRETGVIAQEVQKVLPEAVMESDEDHILSVAYGNMNGLLIEAIKELNEKVDSLQNEVQELKRPWWKKLLRL
Physico‐chemical
properties
protein length:1399 AA
molecular weight: 150983,45610 Da
isoelectric point:5,09837
aromaticity:0,10007
hydropathy:-0,39778

Domains

Domains [InterPro]
DC_0056
ATT
1–355
DC_0056 cd19958 DC_0421
DC_1451
STR
295–521
DC_1451 IPR030392 Coil
DC_1451
STR
487–977
DC_1451 IPR030392
URQ03501.1
1 1399
Architecture
ATT
STR
ATT 1-355 | STR 356-1390 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ03501.1
1 1399
Domain Start End Length (AA) Confidence
N-terminal 1 716 716 0,1115
Central domain 717 915 200 0,3351
C-terminal 916 1399 483 0,8433
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-716
Central
717-915
C-terminal
916-1399

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA23
[NCBI] 		2938950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ03501.1 [NCBI]
Genbank nucleotide accession
ON190025 [NCBI]
CDS location
range 58942 -> 63141
strand -
CDS
ATGGCAGAACTAAGATCAACTACCGCAATTGGTGGTAACATAGTTTGGCACGGAGGGAATCTTCGCTTTGACCCGCAAGGCGAGACAATTCGCTACCAAGGCCACAAAATTTATACAGAACATGATACACCACTACCAGGCGAATTAGGTAACGGTGGGACGACTTCTGCATTCACGAAAGCTGAATCTGATGGTCGTTTTGCTCCGATTGTTGCTGGCGGCTACGTGAAGAAAACCGGCGATACAATGTCAGGTAAATTGACAAACACGGCAAACGAAATTGAGATCAACGGGGCATCGCCACGTCTGTTGTTGCGCGACAACGTCAACTCGAAAAACTGGTACATTATGAACTCGACTGATAGTTTCAGTATTCGAGAAAATGATGTAGTCACTACTCGCTTCAGAATTGATGCTACTGCTGCCGACTTTTCTGTTGATAGTATTGATATCAACATGAAAACAGCATTGCGTGGGTTTGATGATTGGTTGAGAATCAATGATCAGAATGAGTTTACGTCTGGGGTTTATTACGGAAGCTCTCTATTACGTACAGACGGAACGTTGCAAATCGGCAACAATGGTTCAACTCTGAGTGTAAACGGCTCTGCGTTCACGTATGAAGGTAATAACGTCTTCACTGAAGCATATCACCCAAATGCAGACAAATGGACATCTGCACGCACTCTTACAACGACTCTAACGGGCGATGTAAGCGGTTCTGCGTCTATGACTATTGATGGATCGGCTAATGCGACCGTGACTGTTACAGCGACTGTAGCGAACGATTCACACACACATGACGGTAGGTACTACACTGAAGCTGAATCTGATGCGCGATTTGCAAATGTTACAGGCGATACATTTACGGGAAACGTTGCGATCAGCAAAGCAGGTGCGCGTTTAAGCTTCAACGAGACTCTATATGCAACCGAAAACTCAGGTATTAACTGGATTACGGGTGCGAATCAGAATCTGGAATTAATTCATGAGATTAGTGATGTTGACATCAACACTGATGGTGGTAACGGTCAAGCGTTGATCATTCGTGATAATGGTTCAACTGCATCGGTTGCAGGTCTTGAAGTACAAGGTGAGATATTCGCCAAAGTAAACCAACGTGTGTTCCACGACGCATATCACCCAAATGCTGATAAATGGACTGCTGCACGTACAATCACACTAGGCGGTGATTTAACAGGTTCGGTTTCAATTGATGGTACTTCAAACGTCACGTTGAATGCATCTGTTCCGTCACTATCAAACTACCCGACATTTGCTGAAGTTGGTATACGCGCAGATCAGCCGAATTACTTAGCAACTGGTCGAACAATGTCAGGTGTTGATACTACAGTCGATTGGGATACGTTGACACAAGGTGGCTTCTATTACAAACTATCTCAAGGTACGAATCGCCCATCTGGATTTACGGGCTACTGGTATGTTCAAAACATGACATACGGTACAACGTCAAATACAACTCAAGTTGCATACCCGTATGGATTGACTGGTAACGTGGGTACTATCGCGATGCGTACACGATTCAGCGAAGCGTGGGAAGATTGGGTATACATGTACCATACAGATTACCACCCATATGCTGATAAGTGGACAACTGCACGTTCATTATCTCTTGGTAATGAATTGAGTGGTTCAGTGTCTATTGATGGTAGTTCGAATGTTACACTAAACGCATCGGTTGATCATATCGACAACGTATTGAACATCAATCGCGTTGGAGAATCCAACCCGTCTATTTGGTTGAACAATGATACAGGCGAAACACGTGGTAACATTTACTGGAATCGCGTTGATGGTTCATTACAATTCAGACTAAACGGATCTGATGGTACTACGGCTGAAAACATTATATCAATGTACTCAGATCGTACAGTGTTTACAGATCAAATTCATACAAGCACGTTGGTGAATAGTGACAACACTGAACAAGGTTTGTTGATGTTTGGTGGAGGTACTACTCGCTTGGGTGGTAGTGGTGCAAGTGCTATCTATTTCTGTCCGCTTGGTGTTAATTCAAACGCGTCGAATGATTTTGCAGCATCGCTCAACACGTCTGGTGTAATGTCATTGAATGCATCTTCATCGACGCCGCTTTCTGTACATCGAGTTGAGGAGTCTTCAGTTCCGAACGTTAATATTCGATTCCAAGGAAAGAGTACTGACGGAAATGCACTAGGTGAGGCGTGGTATGCAGGTTCGTTCACTAACGGGGCCGGGTTTGGTATTGGTACAAATGCAGACTTATCAACAGCATCGAATCGATTGTTCGAAGTTGGTAGCGCGGGAGCAGTTGTTCGCAGAGAAGGTTCTGGTGCAACGAGTCTGACAGTTGAAGGTACTGACCCGTTCTTGGTGTTTGACCAAACAGATGTTGGTAAATATGGTTACATTGGGATGGACGGCTCGGGTGCTGATTCGCTTTATGTTCGTACCCCGGACGATTCTACAAGACGCAGTATTTACCATGAATCGAATAAACCAACTGCGAATGATGTAGTCAATAACGTAATCAGTCTAGATGGTTTAGATGCTACTAAGTTCTATCCAGTTGTTTTTGATGCAAACAATACTGCTGGTTATACGTGTGAATTTACACTGTCTGTTGGTTCAGGAACAGGCAGCTCACCATATAACAACAACACTATAACTGGTGTTGCACGTGGCGGCGGTTGGTCAGATCACAATGCATATTATGACTTGATTGTGCAGAAGTATGTTGATTCAGAAACAAACATACATTCAATATGGGAAGGGACTCAGGGATTCACGGGTGTTGTTATCTACGTTCGCGGTGGTCAGAGTATAAATCTGCGTAGTAACTCTCGCGCTCAAGTGTATACTTCAGACTACTCATTCGGTGGGTCGGTGTTCCCTGCTGGGATTTCAAATCCACTAGGTGCTCCGACCAATGCTAATATATTTGCGTACTTCTCAAAGTCTGGTAGATATACATCAAGTTCAGCGACTCGTTACAAGCTGAATACGGGGGAGATGAATTTAAATTCAGGTTCAAATAACGGTTTGTTTAAAATTGAAACTGATGCGAACTACGATTCTATAATTCGAATGTCAGAAGATGGGGCAGCTCATGGTGGGTTTATTCACTATCTAGGGGCTACGACCAATGAATTTAAAATTGGTACACGTCAGAGTGATGTAGATACTACTGCACTGACAATCCCTCGTGGTACTTCTAATGTGTTCGTTGGCGGGAATCTGTATGCTAACGGTGGTACAGTTCAGTTGGCATCGAAGATTAACTTGACTTATGATTCGACTAGAGTGTTAACTGTTTACAACGGTAATAATAGTAAATCTGCATGGTTCGGTTGTCGTAATTCGTCATATGCTCACATGGAGACTAATGCAACTAATGGGTTCTATTCATACAGTAAATTCAACTTCGGCTCGGATGTTGATGTATTATTAAACAAAAACATTCTATTGGGTGGGAAGCGAGCTTTCAGAAACAATGAAGGCGCGTGGTTGAGATTGAACCCATATGCTGATTTCAGCTCTGGGATTTATTGTGGTAGTTCATTGCTACGTACAGATGGTCAAATCACTTCAGGTTCGTGGTCTGGCTCGAATAAATCAGCTAGAGTTGCGTCAAACTTTTATGACTCAACGTGGGCGGGTAACGGAACTGCTGCATTTAGCGTAAACAACCCAGATACCGTGGGTGCTCACTGGGCATTTGCTTCTTTCTACAACGGTAGTAATATTCGCTCGGGTATTCAGATTCTATCAAATTCTGAAGGTCGTATGCGTTTCTATACTAACCGTCGTTCGAAGTATGTTGAGATAAATGGTGGTAGTGTAGTTGCAACTGGTAACGTTACAGCTTACTCAGATGCACGTTTGAAAGAGAATGTCAAGGTTATTGACAATGCACTCAATAAAGTAGGTGAATTAAGCGGGTATACATATGATAAGCGCAAATCATTAGACTCAGATGAGTTTACTCGTGAAACTGGTGTAATCGCGCAAGAAGTGCAAAAAGTGCTGCCAGAAGCTGTGATGGAAAGTGACGAAGATCATATTCTATCAGTGGCGTATGGCAATATGAACGGTCTTTTGATTGAAGCTATTAAAGAGCTTAATGAGAAAGTCGATTCACTTCAGAACGAAGTACAAGAACTTAAACGCCCATGGTGGAAGAAGTTGCTTCGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fbb4db5420f28e20860c02f640db243f3ab94f31961ff5ee2d3f3b61c73d5d18
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4900
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a bacteriophage and its application for the inhibition of Vibrio alginolyticus in shrimp farming He,Z. 2024 — GenBank