Protein

View in Explore
Genbank accession
YP_009205873.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MTQTTGEKEGVFYGYSLYDLNKEKLITFDELLTGIKGEPGENGDIGPQGNQGPVGPQGIQGDTGLQGVPGENGAIGPKGIQGETGAQGIQGPQGLQGDPGTQGPQGIQGLKGDKGDQGIQGETGAQGIQGIQGVPGAKGDIGPVGPAGLTWKGSWNIATAYAVNEAVGHDGSLYFATAESTGQTPSLGSDYWEVLATEGPEGRQGVEGAQGPQGIQGPQGIQGPKGDTGETGLQGLKGDKGETGLTGPQGLQGIRGEQGETGAPGIQGIQGIAGDQGPKGDTGDKGDTGATGPAYEYKKVSRFTMPAAGISNSTPLFDSGLTISMLGVKANTFRFTLTNTGSASRVIDGEIIYFDPDGTAKRFVVHFSIAAGETTNFGTYTYAITTPRVFTLNFNATGTTQHAHEVKYFIIGRDGYTENTSVGATVTIEKLYN
Physico‐chemical
properties
protein length:433 AA
molecular weight: 44296,05450 Da
isoelectric point:4,63990
aromaticity:0,07159
hydropathy:-0,48868

Domains

Domains [InterPro]
DC_1939
ATT
1–45
DC_1939 DC_1266 DC_1819 DC_2214
IPR018247
Unmapped
19–31
IPR018247 IPR050149
IPR008160
STR
34–92
IPR008160 IPR008160
YP_009205873.1
1 433
Architecture
ATT
STR
RBD
ATT 1-45 | STR 46-295 | RBD 296-433
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vb_EcoM-VR5
[NCBI] 		1567026 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009205873.1 [NCBI]
Genbank nucleotide accession
NC_028881 [NCBI]
CDS location
range 107761 -> 109062
strand +
CDS
ATGACACAAACTACAGGTGAAAAAGAAGGTGTATTTTACGGTTATTCTCTTTATGATTTGAATAAAGAAAAACTAATAACTTTTGACGAATTACTTACAGGTATTAAAGGAGAGCCTGGAGAAAATGGCGATATCGGGCCACAAGGAAACCAAGGTCCTGTAGGCCCCCAGGGTATTCAAGGGGATACAGGTCTTCAAGGAGTTCCAGGAGAAAATGGTGCTATTGGACCAAAAGGTATTCAAGGTGAAACAGGTGCTCAAGGTATTCAGGGACCACAAGGACTACAAGGAGACCCGGGAACGCAGGGTCCACAGGGTATTCAAGGTCTAAAAGGAGATAAAGGCGACCAAGGTATTCAAGGTGAAACAGGTGCTCAAGGTATTCAGGGTATTCAAGGAGTTCCAGGTGCCAAAGGAGATATAGGCCCAGTCGGTCCTGCAGGTTTAACATGGAAAGGTTCTTGGAATATTGCAACTGCTTACGCAGTTAACGAAGCCGTTGGCCACGATGGAAGCCTATATTTCGCCACAGCTGAAAGCACCGGGCAAACTCCTTCATTAGGTAGCGATTACTGGGAAGTCTTAGCAACGGAAGGACCTGAAGGTCGGCAGGGCGTAGAAGGCGCGCAGGGTCCACAGGGTATTCAAGGTCCACAAGGTATTCAAGGACCTAAAGGTGATACGGGTGAAACTGGACTACAAGGTCTTAAAGGTGACAAAGGAGAGACAGGTTTAACCGGACCCCAAGGACTACAAGGTATTCGTGGCGAACAAGGAGAAACGGGCGCACCGGGTATTCAAGGTATTCAGGGTATTGCTGGAGACCAAGGTCCTAAAGGTGACACGGGCGACAAAGGTGATACAGGTGCCACTGGTCCAGCCTACGAGTATAAAAAAGTATCTAGATTTACAATGCCTGCCGCCGGTATATCAAATTCTACTCCTTTATTCGATTCAGGATTAACAATAAGTATGTTAGGCGTCAAAGCTAATACATTTAGATTTACCCTTACTAATACAGGTTCAGCGTCTAGAGTTATTGATGGTGAAATAATTTATTTTGACCCGGACGGTACAGCAAAAAGATTTGTTGTTCATTTTTCAATAGCTGCTGGTGAGACAACCAATTTCGGTACGTACACGTATGCAATTACAACTCCCAGAGTTTTTACTTTAAATTTTAATGCTACTGGGACTACACAACACGCCCACGAAGTAAAATATTTTATAATAGGACGCGACGGTTATACGGAAAATACTTCTGTTGGTGCTACTGTTACTATTGAAAAACTCTATAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
61b545f769ce3909486852f040a92a11d1b2f545f347bfa00b6067231bbf823d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6004
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
VR bacteriophages - a small but diverse group of low-temperature viruses Kaliniene,L., Meskys,R., Simoliunas,E., Zajanckauskaite,A. and Truncaite,L. 2015-03-10 — GenBank