Protein

View in Explore

Genbank accession

QPI18057.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,89

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAQYEDKVVEVLVTLPDPSTSSSGGSGAPFTGIETQDTVSTTLVGDGTQSSPLQANINVSRRAGNRLQVVNTSNEQGLYVAGSDTKVSAKDGNTVTYITAQEATNAGNPALEGVYSDPVNVSTTSPKKTLEIKADPTGKAKTQIDVVVDPDSGNALKAGATGLSVPVSVALDNTLEIRQGALYVRPQETKISADPDNKIEVKADGIFVATVKGDKGDKGDAGPQGPEGPEGPAGAEGPEGPKGDTGEKGDKGDVGPAGPAGAQGARGEAGPKGPAGIGINVIDKLDEESQLPSVAEMELGDTYVIGQNFWTVVTESNVKQWKNIGNFAGPEGLSAYEVAEGAGFIGTVDEWLTSLKGADGIGLQVLGSLSDPAFLPEEGNKPGDCYIINDKMYVWTGDTDKWDTVGQVGPEGKSAYQVWLANGHTGSQVDFLNSLIGPKGDKGDKGDKGDAGADGKNANAINILGKVADEESLPAGADAGDAYLVGTNVFVSDGAGNWEDLGSFQGPVGDTGPTGPKGDKGDTGEQGPAGKDNYALAVEDGFQGSLTQYLASLKGAKGDTGAQGPRGLQGPQGPQGEVGEGLTILGSKANEGELPTSPAVGDAWLIGDDLYVYNGTAWQNVGPVRGPKGETGAVGPAGVKGDKGDAGPEGPEGPEGPEGPKGEQGDKGNGLNPKGTVPAEANLPTQNNEVGDFWTTVDEGKGFAWDGLQWVNTGMARGNTGPQGPQGPKGDAGEKGDKGEDGANGAGLTPKASVANAAALPSTGNSVGDFRVAEDTGVGYSWDGSTWVDMGNIRGPKGDQGDVGPQGPQGEIGPKGDTGSTGPQGPQGDIGPGVEILGKLDSSSELPGTGTLGQGYLIEGDFWGWTGSAYENLGRIQGPVGPVGPTGDPGPQGPQGVKGDKGDQGSLWIVFDRNPNPADGRVNDYFLNSSTLQFFRKTNATTWAPMGYMGGGNVYDAPKDSKQYARIDGDWSLVEVTEAPEDGGYYIRKDGAWVKLDRYDLRVIETTGAMDASAGNCFKVDGTANKTMSLTGLPAGRAMTIVIRFLGKGAQLTWPANLSWSNGTAPALGTTRTVVILFWDGEFLTGTQAMTVD

Physico‐chemical properties

protein length:	1093 AA
molecular weight:	111823,11980 Da
isoelectric point:	4,36486
aromaticity:	0,06404
hydropathy:	-0,52086

Domains

Domains [InterPro]

DC_1512
ATT
1–89

DC_1512 DC_0915 DC_1340 G3DSA:1.20.5.320 IPR008160 DC_0114

IPR050149
Unmapped
213–905

IPR050149 G3DSA:6.20.230.10 G3DSA:6.20.230.10

IPR008160
STR
216–274

IPR008160 G3DSA:1.20.5.320 DC_0385 G3DSA:1.20.5.320 SSF58046

DC_1340
STR
531–651

DC_1340 G3DSA:1.20.5.320

QPI18057.1

1 1093

Architecture

ATT

STR

RBD

STR

RBD

ATT

RBD

ATT 1-89 | ATT 117-406 | STR 420-767 | RBD 768-876 | STR 877-925 | RBD 926-951 | ATT 952-998 | RBD 999-1093

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1512	ATT	DC_1512	1	89	Novel HMM	DC_1512	N-terminal	Low	Positional only	27 proteins / 27 hits
DC_0915	ATT	DC_0915	117	406	Novel HMM	DC_0915	N-terminal	Low	Positional only	48 proteins / 48 hits
IPR050149	Unmapped	-	213	905	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	216	274	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1340	STR	DC_1340	420	548	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	504	552	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1340	STR	DC_1340	531	651	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	553	594	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR008160	STR	DC_0536	626	668	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0385	STR	DC_0385	629	724	Novel HMM	DC_0385	Central	Low	Positional only	38 proteins / 38 hits
DC_0114	RBD	DC_0114	709	1093	Novel HMM	DC_0114	C-terminal	Low	Positional only	42 proteins / 42 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	718	767	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	877	925	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	952	974	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	975	998	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits
SSF58046	ATT	SSF58046	976	998	Merged direct domain	SSF58046	N-terminal	Low	Positional only	12 proteins / 12 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage POP15 [NCBI]	2759209	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pectobacterium carotovorum subsp. carotovorum [NCBI]	555	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Genbank protein accession

QPI18057.1 [NCBI]

Genbank nucleotide accession

MT560059.1 [NCBI]

CDS location

range 6997 -> 10278
strand +

CDS

ATGGCTCAATACGAAGATAAGGTCGTGGAAGTTCTGGTAACCCTGCCAGACCCATCCACGAGCAGTTCTGGTGGTTCTGGTGCTCCGTTCACGGGCATCGAGACCCAAGATACCGTATCAACTACTTTGGTTGGTGACGGTACTCAATCCTCTCCTCTCCAAGCCAACATCAACGTATCCCGCCGTGCAGGTAACCGCCTTCAGGTAGTTAACACCTCTAACGAGCAGGGTCTGTATGTTGCTGGCTCCGACACCAAGGTGTCTGCCAAAGATGGCAACACAGTCACGTACATTACCGCTCAGGAAGCAACCAACGCAGGTAACCCGGCGCTGGAAGGTGTATACTCCGATCCGGTGAACGTGTCAACCACTTCTCCGAAGAAGACTCTGGAAATCAAGGCGGACCCCACCGGGAAAGCCAAGACCCAGATCGACGTGGTCGTTGACCCAGATAGCGGCAACGCCCTGAAGGCGGGTGCAACTGGCCTGTCTGTTCCTGTGTCTGTGGCACTGGACAATACGCTCGAAATCCGCCAGGGCGCTCTGTATGTCCGTCCGCAGGAGACTAAAATCTCTGCTGACCCGGACAACAAGATCGAGGTCAAGGCAGATGGGATCTTCGTTGCCACTGTGAAAGGTGACAAAGGCGACAAAGGCGATGCTGGCCCGCAGGGTCCAGAAGGTCCAGAGGGTCCGGCAGGTGCCGAAGGCCCAGAAGGCCCTAAAGGCGATACTGGTGAAAAGGGCGACAAGGGTGACGTAGGCCCGGCTGGCCCGGCAGGCGCACAGGGTGCTCGTGGTGAAGCAGGTCCGAAAGGCCCGGCTGGCATCGGCATCAACGTAATTGATAAGCTGGATGAAGAATCACAGCTTCCGTCTGTTGCGGAAATGGAACTGGGCGACACTTACGTTATCGGTCAGAACTTCTGGACTGTTGTGACTGAATCCAACGTCAAGCAGTGGAAGAATATCGGTAACTTTGCAGGGCCTGAAGGTCTGTCTGCATACGAAGTAGCGGAAGGCGCTGGCTTCATCGGAACGGTTGATGAGTGGCTCACTTCCCTGAAGGGTGCGGACGGCATTGGTCTCCAAGTCTTGGGTTCACTCTCCGATCCTGCATTCCTCCCAGAAGAAGGGAACAAACCGGGCGACTGCTACATCATCAACGACAAGATGTATGTATGGACTGGCGATACCGACAAGTGGGATACGGTAGGTCAGGTCGGCCCTGAGGGCAAGTCTGCGTATCAGGTATGGCTGGCTAACGGTCACACTGGATCTCAGGTTGACTTCCTGAACTCCCTGATTGGACCTAAGGGTGACAAAGGGGACAAGGGCGACAAGGGCGATGCAGGTGCTGACGGTAAGAACGCCAACGCCATCAACATCCTCGGCAAGGTCGCCGACGAAGAAAGCCTCCCGGCGGGCGCTGATGCAGGCGATGCGTATCTGGTGGGGACCAACGTCTTTGTTTCTGACGGCGCTGGCAACTGGGAAGACCTCGGCTCCTTCCAAGGACCTGTGGGTGATACCGGGCCAACCGGACCTAAAGGGGACAAAGGTGATACCGGGGAGCAGGGTCCGGCAGGTAAGGATAACTATGCACTGGCGGTTGAGGATGGCTTCCAAGGCTCCCTGACGCAATACCTGGCATCCCTCAAAGGTGCGAAAGGCGACACTGGTGCTCAAGGACCTCGTGGTCTTCAAGGCCCGCAAGGACCACAGGGTGAAGTCGGTGAAGGTCTGACTATTCTTGGTTCCAAAGCCAACGAGGGTGAACTTCCAACCTCCCCGGCAGTGGGCGACGCATGGCTGATCGGTGACGACCTGTACGTGTACAACGGTACTGCTTGGCAAAACGTTGGCCCGGTACGCGGACCGAAAGGTGAGACTGGTGCTGTCGGCCCGGCGGGAGTGAAGGGGGATAAGGGCGACGCAGGTCCTGAAGGCCCAGAAGGCCCAGAAGGCCCAGAAGGCCCGAAAGGCGAGCAGGGTGACAAAGGTAACGGACTGAATCCGAAAGGTACTGTCCCTGCCGAGGCAAACCTCCCTACCCAAAACAACGAAGTTGGTGATTTCTGGACCACCGTTGACGAAGGTAAAGGGTTCGCATGGGATGGCTTGCAGTGGGTTAACACTGGCATGGCTCGTGGTAACACTGGACCACAGGGACCGCAAGGCCCGAAAGGTGACGCAGGCGAGAAAGGGGACAAGGGTGAAGACGGTGCCAACGGCGCTGGCCTGACTCCGAAGGCTTCTGTAGCCAATGCGGCTGCTCTGCCTTCTACCGGGAACTCCGTGGGTGACTTCCGTGTTGCCGAAGACACTGGCGTTGGTTACTCTTGGGACGGTTCCACTTGGGTGGACATGGGCAATATCCGTGGACCGAAAGGCGACCAAGGTGATGTCGGCCCTCAAGGACCCCAAGGGGAGATTGGCCCTAAGGGTGACACAGGTTCCACTGGTCCGCAAGGCCCTCAGGGCGACATCGGCCCAGGTGTAGAGATCCTCGGTAAGTTGGACAGTTCTTCTGAACTGCCTGGCACCGGGACTCTGGGACAAGGTTACCTGATCGAGGGTGACTTCTGGGGATGGACTGGCTCTGCCTACGAAAACCTCGGGCGTATTCAAGGCCCGGTTGGCCCGGTAGGTCCTACTGGTGACCCCGGCCCGCAAGGTCCTCAGGGTGTCAAAGGCGACAAGGGGGACCAAGGTTCTCTGTGGATCGTATTTGACCGCAACCCGAATCCAGCCGATGGTCGTGTGAACGACTACTTCCTGAACTCATCTACCCTCCAGTTCTTCCGTAAAACGAACGCAACTACGTGGGCACCGATGGGCTACATGGGTGGTGGTAACGTATACGACGCACCGAAAGACAGTAAGCAGTATGCCCGTATCGACGGCGACTGGTCACTCGTTGAGGTGACTGAAGCGCCAGAAGATGGCGGATACTACATCCGTAAGGATGGGGCTTGGGTCAAACTGGATCGTTACGACCTGCGTGTCATCGAGACCACTGGTGCAATGGACGCCTCTGCCGGGAACTGCTTCAAGGTTGACGGTACGGCGAACAAAACCATGTCTCTGACTGGCCTTCCTGCCGGACGGGCGATGACTATCGTTATCCGCTTCCTCGGCAAGGGCGCACAGTTGACCTGGCCTGCGAACCTGTCATGGTCCAACGGCACTGCCCCGGCGCTCGGAACCACTCGTACAGTGGTGATCCTGTTCTGGGACGGAGAGTTCCTGACTGGTACTCAGGCGATGACTGTTGACTAA

Genome Context

Tertiary structure

PDB ID

9255dc254cbe756daa8a47d53610439c32619cc835626ab344d4e38fb0b759cf

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6612

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence