Protein

View in Explore
Genbank accession
YP_010767175.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MDLIKYDMADIWASAGDVVAPDSAKIAQGWGVEVVPRQWWNWFENRQDNNLAYMLQKGFPEWDATTEYIINKSYVQRSGIVYKATATSTNSDPIALLSWVKAFPESSNSLEAIRTLTPAADRVPYYTGADTAALMTVTAFARTLLDDPNVTTMRSTLGAQATHPNLTTLSTVTAAANALPYFTGTNSAATTTLTSFGRSLIDDADAVAARATLGLTSAAITQLQANATERDISKIMRVGAFGLGSFLDLRTHIYATGVPSDCYSAGTVFGFVNGGVGGLAIPGLSGTQYGVLQVNGQYSDASGLTAMSRVFIGPSGRTFTQTASSASAWGTWVESWTTGNLTKTTTARDTTAGSMLKFGDFGLGSAITIASDDLNTVVDSGFYRLGGSNPNLPPGGVAGFGQMIVSRGNDTISQMVIGYTGPKIWIRSGNPTNIGGVGVWTSWVELYHTGNTAQIVSDVTAGIQPQLDAKVNKAGDVMTGQLRVPNIVYTPLSGQGGTAYFLANGSTAPGGTDANITVDSPTAGNNGGRMVVNAGRFYMNCPTTTIGVASFQSDINTSGNVNAVNLTGSGTITGAYVTSTGNVNANGTFTGAGLVTTGGVTIGGQITTNAGLVAVKASSAAANSHIWFYDNLGNTRGIIYAQQSNIVSLQAGGALCANFSPSGSSSFNLTSMSGIENSGRTRTLKNGIPVNSSMYANCHYMAETSDGTPPAYSWHRGGSYAVAVWLTNANELQMMDSGGVNRELINNVNLPAWNNTIYANGNQNIGSYAFARNGGGTVGFGGAQSGSVLSPGSTGANSGALSGTWICLGYAGGGNHTLWIRTS
Physico‐chemical
properties
protein length:823 AA
molecular weight: 85394,92870 Da
isoelectric point:5,84694
aromaticity:0,08748
hydropathy:-0,04532

Domains

Domains [InterPro]
DC_2128
STR
1–252
DC_2128 DC_1143 DC_1924
cd19958
STR
365–447
cd19958
YP_010767175.1
1 823
Architecture
STR
STR
RBD
STR 1-252 | STR 335-455 | RBD 605-823
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa397
[NCBI] 		1460367 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus psa397
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010767175.1 [NCBI]
Genbank nucleotide accession
NC_073683.1 [NCBI]
CDS location
range 52640 -> 55111
strand +
CDS
ATGGATCTGATTAAATATGACATGGCGGATATCTGGGCCTCTGCGGGTGACGTAGTTGCACCAGACTCTGCTAAGATTGCACAAGGTTGGGGTGTCGAAGTTGTTCCACGTCAATGGTGGAACTGGTTTGAAAACCGTCAAGACAACAACCTTGCTTACATGCTTCAAAAGGGTTTCCCAGAATGGGACGCCACAACTGAATACATCATCAACAAGAGTTATGTTCAACGTAGTGGTATTGTCTACAAGGCAACTGCAACAAGCACAAACTCTGACCCAATTGCATTGCTATCTTGGGTAAAAGCTTTCCCAGAATCGTCTAACAGCCTTGAAGCTATCCGTACACTGACTCCTGCTGCTGACCGTGTTCCGTACTATACTGGTGCTGACACCGCTGCTCTGATGACAGTTACGGCCTTTGCTCGTACACTTCTGGACGACCCCAATGTAACAACAATGCGTTCCACTTTGGGCGCTCAAGCTACTCACCCTAACTTGACAACTCTGTCCACTGTGACGGCTGCTGCTAACGCCCTGCCATACTTCACAGGAACAAACTCTGCTGCTACGACAACACTTACATCGTTTGGTCGTTCTTTGATTGATGACGCTGACGCTGTTGCTGCACGTGCAACTCTTGGACTGACATCTGCTGCAATCACCCAGCTACAGGCTAACGCCACTGAGCGTGACATTTCCAAGATCATGCGTGTTGGTGCTTTCGGTCTGGGTAGTTTCCTTGACCTGCGTACACACATCTACGCGACTGGTGTTCCAAGTGATTGCTACTCTGCTGGTACTGTCTTCGGATTTGTAAACGGTGGTGTTGGTGGTTTGGCTATTCCGGGGCTGTCTGGTACTCAATACGGCGTCCTGCAAGTTAACGGACAATACAGCGATGCTTCTGGCCTTACCGCTATGTCTCGCGTATTCATCGGGCCAAGTGGACGTACTTTCACTCAAACTGCTTCCTCTGCTTCGGCTTGGGGTACATGGGTTGAGTCTTGGACTACTGGAAACCTGACAAAGACAACAACAGCACGTGACACAACTGCTGGCTCTATGCTTAAATTTGGTGACTTCGGACTTGGAAGTGCAATTACAATTGCATCTGACGACTTGAACACTGTGGTTGATTCTGGGTTCTACCGTCTAGGTGGTTCTAACCCTAACCTCCCACCGGGTGGCGTTGCTGGCTTCGGTCAAATGATTGTATCTCGCGGTAACGACACAATCTCCCAAATGGTTATTGGTTATACAGGCCCAAAAATCTGGATTCGTTCTGGCAACCCAACTAACATTGGTGGTGTTGGAGTTTGGACTTCTTGGGTTGAACTTTACCACACTGGTAACACTGCACAGATCGTTTCTGACGTAACTGCTGGTATCCAGCCGCAATTGGACGCCAAAGTTAACAAGGCTGGCGATGTAATGACTGGTCAGTTGAGAGTTCCAAACATTGTTTACACTCCATTGTCTGGACAAGGTGGTACTGCCTACTTCCTAGCGAACGGCTCTACTGCTCCGGGTGGTACAGACGCAAACATCACAGTGGACTCGCCTACTGCCGGTAACAACGGTGGACGTATGGTGGTCAACGCTGGTAGGTTCTACATGAACTGCCCTACCACTACAATTGGTGTCGCGTCCTTCCAGTCTGATATTAACACATCTGGTAACGTAAACGCTGTTAACTTGACAGGTTCTGGTACAATTACTGGTGCTTACGTAACATCCACGGGTAACGTCAACGCCAACGGTACTTTTACTGGTGCTGGGCTTGTCACGACTGGTGGTGTAACTATCGGAGGTCAGATCACTACCAACGCTGGACTTGTTGCAGTTAAGGCAAGCTCTGCTGCTGCTAACTCCCACATTTGGTTCTACGATAACCTTGGAAACACACGTGGTATCATTTACGCTCAGCAGTCTAATATTGTTTCGCTTCAAGCTGGTGGTGCTCTTTGTGCCAACTTCAGCCCAAGTGGTTCTTCTAGTTTTAACCTGACAAGTATGTCTGGAATTGAAAATAGTGGACGTACAAGAACACTGAAGAACGGTATCCCAGTTAACAGCAGTATGTACGCTAACTGCCACTACATGGCTGAAACAAGCGACGGTACTCCACCTGCCTACTCTTGGCACCGTGGTGGTAGCTACGCCGTAGCGGTATGGCTAACAAACGCCAACGAGTTGCAGATGATGGACTCCGGCGGTGTCAACCGTGAGTTGATTAACAACGTCAACCTCCCAGCTTGGAACAACACTATCTACGCCAACGGAAACCAAAACATTGGTAGCTACGCATTCGCCCGTAACGGTGGTGGTACTGTTGGATTTGGTGGTGCTCAGTCTGGTAGCGTATTGTCTCCGGGTTCTACAGGTGCAAACTCTGGTGCTCTTTCTGGTACATGGATCTGCCTTGGATATGCCGGTGGCGGAAACCACACACTGTGGATCAGAACTTCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
000e97ac27602adf30d2a2bf2fd2638b718c78013b03bcfd1ad55ff1aa356b71
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6424
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank