Protein

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Genbank accession
AGH07455.1 [GenBank]
Protein name
tail sheath protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALNLVSPGVKVREVDLTVGRIDGLADQVGAIAGPFAKGPVNEPVLIETEADLLATFGKPYTADGQYEYWMTASAFLSYGGVLRVLRSSNSTLSNANVPVGAAVTNLQIKSQEDYYNNYTQPTTWHYAARSPGSWANDLKICTIDGAADQRIAIGTEGLSVGFAVTAAFSSQVANTDGTVGVQTGYLKGLITDINVGSIDVKVVAKHNVSNDTWTKAGYEEGSDTNAFQGYSLSIFTANENADATVNHANRLKIFNNSGQSVSIERTQFQANIGIGSTTIEFGADLNTLKTAPGDTIRSLNGTYSGTIVSYATTGGVAQIIMDTAATVAFANTAFQVMSGIDSGIYLREGNSVVDWYDQQTLGLTNQTIFWSQIAERPTTSEFAKDRSGENDEVHVVVVDDTGKVTGTSGNIVEKWTGLSKATDAKVSPSTNIYYKDYVAQFSNYAFVGVAQTGLGLKNTSLSGYTVDSSGVWGQPAQGVVFNGSGPKTFSLTNGNDYGGIGKFDCTLGEVVNSYTVLDNPAEYAVNFLIQGPSSGASIYEAQAKANKLLSIASVRKDCVACISPYREGVVGVTNTDQQTANIVQFYDSLQSTSYGVFDSGYKYTFDRFNNTFRYIPLNGDIAGLMARTSINSFPWFSPAGAARGTINNAIKLAYNPSQAQRDTIYPKRINPVIFSPGSGIVLFGDRTAQKQASAFDRINVRRLFLTIEGTIERAARSQLFEFNDELTRSNFLNIVEPYLRDVKSKRGISDFVVICDETNNTPDVIDSNTFKADIFVKPARSINFIGLTFVATRTGISFDEVVGSA
Physico‐chemical
properties
protein length:806 AA
molecular weight: 86637,36670 Da
isoelectric point:4,99390
aromaticity:0,10174
hydropathy:-0,13759

Domains

Domains [InterPro]
G3DSA:3.40.50.11780
STR
26–146
G3DSA:3.40.50.11780 G3DSA:3.40.50.11780 IPR020287
DC_1098
STR
131–472
DC_1098 IPR035089
G3DSA:3.40.50.11780
STR
443–660
G3DSA:3.40.50.11780
IPR052042
Unmapped
579–790
IPR052042
AGH07455.1
1 806
Architecture
STR
TAS
TAS
STR 26-660 | TAS 661-689 | TAS 693-792 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07455.1
1 806
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,7449
Central domain 137 355 220 0,6796
C-terminal 356 806 450 0,3056
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-355
C-terminal
356-806

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6a
[NCBI] 		682650 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07455.1 [NCBI]
Genbank nucleotide accession
HQ317391 [NCBI]
CDS location
range 8893 -> 11313
strand +
CDS
ATGGCGCTTAATCTAGTATCTCCAGGCGTTAAGGTAAGAGAGGTTGACTTAACTGTAGGAAGGATTGACGGCCTTGCCGATCAGGTGGGTGCTATTGCAGGACCTTTCGCAAAAGGACCTGTCAACGAACCAGTATTGATCGAGACAGAAGCTGACTTACTTGCAACGTTTGGTAAACCCTATACCGCTGACGGACAATATGAATACTGGATGACTGCATCCGCGTTCTTGTCATACGGTGGAGTTCTTAGAGTTCTAAGAAGTAGCAACAGCACACTTTCCAACGCTAACGTGCCTGTTGGTGCTGCAGTTACTAACTTACAAATCAAGTCTCAAGAAGACTACTATAATAACTACACTCAACCTACAACTTGGCATTACGCTGCAAGATCACCTGGCTCTTGGGCAAATGATCTTAAGATATGTACCATTGATGGTGCCGCAGACCAGAGAATTGCAATCGGTACAGAAGGATTATCAGTTGGATTCGCTGTAACCGCTGCGTTCTCATCTCAGGTTGCAAACACAGATGGAACAGTTGGTGTTCAAACAGGTTACTTAAAAGGTCTTATTACTGATATCAATGTTGGTTCTATTGATGTCAAAGTTGTTGCGAAACACAACGTTTCTAATGACACTTGGACTAAAGCTGGTTACGAAGAAGGATCTGACACTAATGCTTTCCAAGGATATAGTTTGTCTATCTTTACTGCAAACGAAAATGCTGATGCAACAGTCAATCATGCAAACAGACTGAAGATCTTTAACAATTCTGGACAATCAGTTTCGATTGAAAGAACTCAATTCCAAGCAAACATCGGTATTGGTTCCACAACTATCGAATTTGGAGCAGATTTAAACACACTCAAGACTGCACCTGGCGACACAATCAGATCTCTTAACGGAACTTACTCTGGTACTATTGTTTCTTACGCAACCACTGGTGGTGTTGCACAAATCATCATGGACACTGCAGCAACTGTTGCATTTGCAAACACAGCATTCCAAGTGATGTCTGGTATTGACAGTGGTATCTACCTCAGAGAAGGTAACTCCGTTGTTGACTGGTATGATCAACAGACTCTTGGACTTACAAACCAAACTATCTTCTGGAGTCAGATTGCAGAACGTCCAACAACTTCTGAATTTGCTAAAGACAGAAGTGGTGAGAATGATGAAGTTCATGTTGTCGTTGTTGATGACACAGGTAAGGTAACAGGCACATCTGGAAACATTGTAGAGAAATGGACTGGATTATCTAAGGCAACTGACGCTAAGGTTTCTCCTTCCACAAACATCTACTACAAAGATTACGTTGCACAGTTCTCCAACTATGCTTTCGTTGGTGTTGCTCAAACTGGTCTTGGTCTCAAGAATACTTCTTTAAGTGGATACACAGTAGATAGTTCTGGTGTTTGGGGACAACCAGCACAAGGAGTTGTTTTCAACGGTTCAGGTCCTAAGACATTCTCACTTACAAACGGAAACGATTACGGTGGAATTGGTAAGTTTGATTGTACATTAGGTGAGGTTGTAAATTCTTACACAGTTCTTGACAACCCTGCTGAGTATGCAGTTAACTTCCTTATCCAAGGTCCTTCAAGTGGTGCATCCATCTATGAAGCACAGGCTAAGGCAAACAAACTGTTGAGTATTGCATCTGTCAGAAAAGACTGTGTTGCATGTATCTCTCCTTATAGAGAGGGAGTTGTTGGTGTAACTAACACTGATCAACAAACTGCAAACATCGTACAGTTCTACGATAGTTTACAATCTACATCTTATGGTGTATTTGACTCTGGTTATAAGTACACATTTGATAGATTCAATAATACATTCAGATACATTCCTCTGAATGGAGACATTGCTGGATTGATGGCAAGAACTTCGATTAACTCATTCCCTTGGTTCTCCCCCGCTGGAGCAGCTAGAGGAACAATCAACAATGCTATCAAACTTGCATACAACCCATCTCAAGCACAAAGAGATACGATTTATCCTAAGAGAATTAACCCTGTTATCTTCTCTCCTGGCTCTGGTATCGTATTGTTCGGTGACAGAACTGCTCAAAAGCAAGCTTCTGCTTTCGATAGAATCAACGTCCGTCGCTTGTTCTTAACAATCGAAGGAACTATCGAGAGAGCTGCAAGATCGCAGTTATTTGAATTCAACGATGAACTTACAAGATCTAACTTCTTAAACATTGTTGAACCTTATCTTCGTGATGTTAAGTCTAAGAGAGGTATCTCGGACTTTGTTGTCATCTGCGATGAGACAAACAACACACCTGATGTTATTGACTCTAACACATTTAAGGCAGACATATTCGTGAAGCCTGCACGTTCTATCAACTTCATTGGTCTAACCTTTGTTGCAACTAGAACAGGCATCAGCTTCGATGAAGTTGTAGGTTCCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9184529562cbda11ea3d1826393661fa93145ab775b415540ee34a29abe53abe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6727
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6a Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank