Protein

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Genbank accession
YP_003344926.1 [GenBank]
Protein name
head closure Hc3
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSARWREAPVTGGAYSDETRAWTVQDTVNWIPEAAERGGGRSSSMLRCAPGAAVFCVPEAANPAPVRGLHDVEDKLFAVIGTKLWQITTAGVAIPRGTIPGVERVCMAHNQIAGGNQLVIGNGTSGYVYNTYTELLAEQITGEGFPGFKACDYVDSYIVGVEPSGRYWFHSALADASSYRTLDRYEAESQPDRIVGLAVIHRTVFVLGKRSGEFFYNSGASEGTFQRHAGTEMQTGCASQHTIQQMGNTVFWLGHDGRVYRLDGYQPVRISTPPLEQAITACNHEEAFAFTFDDRGHQVYYLTFPDGMTWGFDIATREWHRRESFGVSRWRMNACVRWAAHWVAGDFANGKLYTLDWGMPWEHGEVIERRRVNGVLHDHQNRMTVDAVELVFGTDALGGYKGPGDLTPPQPAGPTLSGNAPDAVNKQAYRYAYTMKPGATPIVAVRVVSGALPEGLSLDPKGVLSGTVEVAGLFAGAKRAYPFTIRVTDANGLWASVSDTMTITTAEVICGTSTSYSGGQAFPNIVHVQLGSQTGLVTLAYATAANPDKFQVWIGGQKVIDTGYHGDTSYQVQLDADLKNRGLPQETITQRPGGESTPEGQFADKNYETATFQKTTADTIAEVRVYSPLAGTGWQFHLDCPT
Physico‐chemical
properties
protein length:642 AA
molecular weight: 69858,27270 Da
isoelectric point:5,67113
aromaticity:0,10436
hydropathy:-0,27975

Domains

Domains [InterPro]
DC_1658
STR
6–415
DC_1658 DC_2153
IPR021098
STR
74–221
IPR021098 IPR013783
SSF63825
STR
191–358
SSF63825 PF05345
YP_003344926.1
1 642
Architecture
STR
STR 6-505 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003344926.1
1 642
Domain Start End Length (AA) Confidence
N-terminal 1 501 501 0,7222
Central domain 502 631 131 0,5722
C-terminal 632 642 10 0,8818
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-501
Central
502-631
C-terminal
632-642

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Xfas53
[NCBI] 		670252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xylella fastidiosa subsp. multiplex
[NCBI] 		644357 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xylella > Xylella fastidiosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003344926.1 [NCBI]
Genbank nucleotide accession
NC_013599 [NCBI]
CDS location
range 27411 -> 29339
strand +
CDS
ATGAGCGCCCGATGGCGTGAAGCCCCTGTGACCGGAGGCGCTTATAGCGACGAGACACGCGCCTGGACAGTGCAGGATACGGTGAACTGGATTCCAGAAGCCGCCGAACGTGGTGGAGGGCGTTCGTCCTCCATGTTGCGCTGCGCTCCTGGGGCGGCTGTGTTTTGTGTCCCTGAAGCCGCTAACCCTGCTCCGGTGCGCGGATTGCATGATGTGGAAGACAAGCTGTTCGCAGTGATCGGTACGAAGCTGTGGCAGATCACCACAGCGGGGGTGGCCATCCCTCGCGGGACCATTCCAGGCGTTGAGCGTGTCTGCATGGCGCACAACCAGATTGCCGGAGGGAATCAGTTAGTGATCGGTAACGGTACCTCCGGCTACGTCTACAACACCTATACGGAATTACTCGCCGAACAGATCACCGGTGAAGGGTTCCCAGGGTTCAAGGCGTGCGATTACGTGGACAGCTACATTGTGGGTGTTGAGCCTTCGGGCAGGTACTGGTTCCATTCCGCTCTGGCCGACGCCTCCAGTTACCGCACACTTGACCGTTATGAGGCCGAAAGCCAGCCAGACCGCATTGTCGGATTGGCCGTGATCCATCGCACTGTTTTCGTGCTGGGCAAACGCTCTGGGGAGTTCTTCTATAACAGCGGCGCATCGGAAGGTACTTTTCAACGCCATGCAGGCACTGAAATGCAAACAGGCTGCGCCTCCCAGCACACCATCCAACAGATGGGCAATACGGTTTTCTGGCTGGGACATGATGGCCGTGTGTATCGGCTAGACGGCTATCAACCGGTTCGAATCAGCACACCGCCGCTGGAGCAGGCCATCACCGCGTGCAACCATGAGGAAGCATTTGCGTTCACCTTTGATGACCGTGGGCATCAGGTGTACTACCTGACCTTCCCCGATGGGATGACCTGGGGGTTTGATATAGCAACCCGTGAATGGCATCGCCGCGAGTCCTTCGGGGTCAGTCGTTGGAGGATGAACGCCTGTGTACGGTGGGCCGCCCACTGGGTGGCTGGCGATTTTGCAAACGGCAAGTTGTATACCCTGGACTGGGGGATGCCGTGGGAACACGGCGAAGTGATTGAGCGCCGCCGTGTGAATGGCGTTCTGCACGACCATCAGAACCGCATGACCGTAGATGCCGTGGAGCTTGTGTTTGGGACAGATGCCCTTGGCGGCTACAAAGGGCCGGGCGATCTCACCCCCCCACAACCGGCAGGGCCTACGCTCAGCGGCAACGCACCAGATGCGGTGAACAAACAGGCGTACCGCTACGCCTACACCATGAAACCTGGTGCAACGCCCATTGTGGCAGTACGTGTAGTGAGCGGTGCGCTCCCCGAAGGGTTGAGCCTTGATCCTAAAGGCGTGTTGTCAGGCACCGTGGAGGTGGCGGGGCTGTTTGCCGGAGCCAAGCGCGCTTACCCCTTTACGATTCGCGTGACCGACGCGAACGGACTGTGGGCCTCCGTGAGCGACACGATGACAATCACGACCGCCGAGGTGATTTGCGGTACCTCCACGAGCTATAGCGGAGGGCAAGCGTTCCCGAACATCGTGCATGTGCAGCTTGGAAGCCAAACGGGACTTGTGACGCTCGCCTACGCCACCGCCGCCAACCCTGACAAGTTCCAGGTGTGGATCGGCGGGCAGAAGGTCATTGATACGGGCTACCACGGCGACACCAGTTATCAGGTGCAACTGGATGCGGACCTTAAAAACAGGGGGCTACCCCAAGAGACCATTACCCAGAGGCCGGGGGGCGAATCCACCCCCGAAGGCCAGTTCGCCGACAAAAACTACGAAACAGCCACGTTCCAAAAGACCACCGCCGATACGATCGCTGAGGTTCGGGTGTACTCACCGCTGGCGGGGACGGGGTGGCAATTCCACCTGGACTGCCCAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
32ac5a1923984ce8ef1b07e30765ebc28fea04f0885e5c43539456b290cf8ff9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8513
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50