Protein

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Genbank accession
UCR90940.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MPLVTQTIKNLKGGISQQPDILRFPDQGEAQINGFSSEVEGLQKRPPSVHVKRLTTFTPGLKPLVKLINRDEFERYFVSFLPGGYISIVDLDGNAKTVNTPNGTGYINSANPREDLRMVTVADYTFIINKKVTPALDGSVAYPGYRTNGQALVNVKGGQYSRTYSIEFNGGVQASYTTPDGSVAAHAAQIDTQYIAQQLGNQLVSNLGPSGWGVDVGPNYIFIQAPSSNSVWNLKIRDGFNNGLMTGCIFEVQRFNMLPAQARDGYIVKVLGDPGSGSDDYYARFDVGRGVWAECAAPGYQGTLAPWSMPHVLVREANGTFTFREQTWQVRPSGDIDSSPEPSFVGTPISDVFFFRNRLGVLAGENVILSASGEFFKFWPKSVVAAADTDPIDVAVSHSRVSILHHAVPFAEELLLWSDQTQFILKSDGILSTKTVKVDTATEFESSIDARPVAAGRGVYFAAPRASFTSIRRYYAVQDTSQVKNAEDISAHVPSYVPNGVFALGSSTTENVVTVLTEGATSRIYLYKYLYLQEQLAQQSWSHWDFGPGSEVLACEMVGAVMYLMINSPSGTYLESIEFTQNTKDYDFEPFRLHMDRKKQVETLTYNLATNRTVISLATEYGATPARGKYWVVTEDGRGYEFPEPETGWVAQGGTLEIPGDLTSKTMLIGEAYTFTYTMSKLLIKVADAQGVRSEDVGRLQIQRAWVNYNNSGPFTVDVCGKFLYTMSGKKLGAYVLGEDALDTGQFRFPVMTDSQRCRVTISSDNPGPVAMIGAGWIGRYFRREQAL
Physico‐chemical
properties
protein length:788 AA
molecular weight: 86719,61460 Da
isoelectric point:5,52108
aromaticity:0,11168
hydropathy:-0,21447

Domains

Domains [InterPro]
IPR058003
TTP
1–787
IPR058003
UCR90940.1
1 788
Architecture
TTP
TTP 1-787 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UCR90940.1
1 788
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9762
Central domain 139 337 200 0,1610
C-terminal 338 788 450 0,1853
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-337
C-terminal
338-788

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RpY2
[NCBI] 		2880950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia pseudosolanacearum
[NCBI] 		1310165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UCR90940.1 [NCBI]
Genbank nucleotide accession
OK318991 [NCBI]
CDS location
range 24838 -> 27204
strand +
CDS
ATGCCACTCGTCACACAAACCATCAAGAACCTGAAGGGCGGCATCTCGCAACAGCCGGACATCCTGCGCTTCCCCGACCAAGGCGAGGCCCAGATCAACGGCTTCAGTTCCGAGGTCGAGGGCTTGCAGAAGCGGCCCCCTTCGGTCCACGTCAAGCGCCTGACCACGTTCACCCCGGGGCTGAAACCGCTGGTGAAGCTGATCAACCGGGACGAGTTCGAGCGGTACTTCGTGTCGTTCCTCCCCGGTGGGTACATCTCCATCGTGGACCTCGACGGGAACGCCAAGACGGTGAACACCCCCAACGGGACCGGCTACATCAACAGCGCGAATCCCCGCGAGGACCTCCGCATGGTCACCGTGGCGGACTACACCTTCATCATCAACAAGAAGGTGACCCCGGCGCTGGACGGCTCGGTGGCCTACCCGGGGTATCGCACCAACGGGCAGGCGCTGGTGAACGTCAAGGGCGGGCAGTACAGCCGCACCTACAGCATCGAGTTCAACGGCGGGGTGCAGGCCAGCTACACGACCCCGGACGGCTCGGTGGCGGCGCACGCGGCCCAGATTGACACCCAGTACATCGCCCAGCAATTGGGCAACCAGCTTGTGTCCAACTTGGGGCCGAGCGGCTGGGGCGTGGACGTGGGGCCGAACTACATCTTCATCCAAGCGCCTAGCTCCAACAGCGTGTGGAACCTGAAGATTCGGGACGGCTTCAACAACGGCCTGATGACCGGGTGCATCTTCGAGGTGCAGCGGTTCAACATGCTGCCCGCGCAGGCGCGTGATGGCTACATCGTCAAGGTGCTGGGCGACCCCGGCAGTGGCTCGGATGACTACTACGCCCGCTTCGACGTGGGCCGTGGCGTGTGGGCAGAGTGTGCCGCCCCGGGCTACCAAGGGACGCTGGCCCCGTGGTCAATGCCGCATGTGCTGGTGCGCGAGGCGAATGGCACGTTCACGTTCCGCGAGCAGACGTGGCAGGTCCGCCCAAGCGGGGACATTGATTCGAGCCCGGAGCCCTCCTTCGTGGGGACGCCTATCTCGGACGTGTTCTTCTTCCGCAACCGGCTGGGCGTGCTGGCGGGAGAGAACGTGATCCTGTCCGCATCGGGCGAGTTCTTCAAGTTCTGGCCCAAGTCCGTGGTCGCTGCCGCAGACACCGATCCCATCGACGTGGCGGTCTCGCACAGCCGGGTCTCGATCCTGCACCACGCGGTCCCGTTCGCGGAGGAGTTGCTGCTGTGGTCGGACCAGACGCAGTTCATCCTGAAGTCGGACGGCATCCTGTCCACGAAGACCGTCAAGGTGGACACCGCGACCGAGTTCGAGTCGAGCATCGACGCCCGCCCGGTGGCCGCTGGCCGTGGCGTGTACTTCGCCGCCCCGCGTGCGAGCTTCACCTCGATCCGCCGCTACTACGCGGTGCAGGACACCTCGCAGGTCAAGAACGCCGAGGACATCTCCGCGCACGTCCCGAGCTACGTCCCGAACGGGGTGTTCGCGCTGGGATCGTCCACGACTGAGAACGTGGTCACGGTGCTGACCGAGGGCGCCACGAGCCGCATCTACCTCTACAAGTACCTCTACTTGCAAGAGCAACTGGCGCAGCAGTCGTGGTCCCACTGGGACTTCGGCCCGGGCTCCGAGGTGCTGGCCTGTGAGATGGTCGGGGCGGTCATGTACCTGATGATCAATTCCCCCTCGGGGACCTACCTCGAATCCATCGAGTTCACCCAGAACACGAAGGACTACGACTTCGAGCCGTTCCGGTTGCACATGGACCGCAAGAAGCAAGTGGAGACCCTGACGTACAACCTCGCCACGAACCGCACGGTCATCTCACTGGCGACCGAGTACGGGGCCACCCCCGCCCGTGGGAAGTACTGGGTGGTGACCGAGGACGGGCGCGGCTATGAGTTCCCCGAGCCGGAGACCGGATGGGTAGCCCAAGGTGGGACGCTGGAGATTCCCGGCGACCTGACCTCGAAGACGATGCTCATCGGGGAGGCGTACACGTTCACCTACACGATGTCCAAGCTGTTGATCAAGGTGGCAGACGCCCAAGGGGTTCGCTCCGAGGACGTGGGCCGCTTGCAGATTCAGCGGGCATGGGTGAACTACAACAACTCCGGCCCGTTCACCGTGGATGTGTGTGGGAAGTTCCTCTACACCATGAGCGGCAAGAAGCTGGGCGCCTACGTGCTGGGCGAGGACGCGCTGGATACCGGCCAGTTCCGATTCCCGGTGATGACGGACTCGCAGCGGTGCCGCGTGACCATCTCGTCGGACAATCCTGGCCCTGTGGCGATGATTGGCGCGGGCTGGATCGGCAGGTATTTCCGCCGTGAACAGGCGCTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
90aa1b1fed03499b82bc41890c452d9d3f3c69fc38e4dfda840b0593f7808208
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3036
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of a Novel Bacteriophage RpY1 Infecting Ralstonia solanacearum Strains Lee,S.Y., Thapa Magar,R., Kim,H.J., Choi,K. and Lee,S.W. 2021 33835234 GenBank