Protein

View in Explore
Genbank accession
YP_010767514.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MNISGILSDADFNINRPANLGSLPTFQFDTGAHVPVDENGLYKPVSKQYTNNSAVVYPVTITDKSSINKILPEVIAQFTKDTIPDAFVTQQDKDKTAKAVQRELIRMWKEREEFQVLDLLEDFVIDSFGPCVLTNLTFREDESSGEALFPTMTIEQVVFTDLQEITVQVKTSNKGRKTGSITTKTGAAAETAPDHAPRTYTKDSKSSAVKPVGPTTQ
Physico‐chemical
properties
protein length:217 AA
molecular weight: 23920,61530 Da
isoelectric point:5,03505
aromaticity:0,07373
hydropathy:-0,39724

Domains

Domains [InterPro]
DC_1100
STR
2–216
DC_1100
IPR048494
ATT
91–167
IPR048494
YP_010767514.1
1 217
Architecture
STR
ATT
STR
STR 2-90 | ATT 91-167 | STR 168-216 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa347
[NCBI] 		1460364 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus psa347
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010767514.1 [NCBI]
Genbank nucleotide accession
NC_073685.1 [NCBI]
CDS location
range 47580 -> 48233
strand +
CDS
TTGAACATCAGCGGTATTCTTTCTGACGCAGACTTCAACATCAATAGGCCAGCGAATCTCGGTTCGCTGCCTACCTTCCAATTCGATACTGGTGCTCACGTACCAGTTGACGAGAATGGATTGTACAAACCAGTTAGCAAGCAGTACACAAACAACTCTGCTGTTGTGTATCCAGTAACCATCACTGACAAGAGTTCTATCAACAAGATTCTCCCAGAGGTTATTGCTCAGTTCACAAAGGACACTATCCCTGATGCGTTTGTAACTCAACAGGATAAAGACAAGACAGCTAAGGCTGTACAGCGTGAGTTGATCAGAATGTGGAAAGAGCGTGAAGAGTTCCAAGTGCTTGACTTGTTGGAAGACTTCGTAATCGACTCCTTCGGGCCTTGTGTTCTCACAAACCTAACATTCAGAGAAGATGAGTCATCTGGTGAGGCTTTGTTCCCAACCATGACAATCGAACAAGTTGTGTTCACTGACTTGCAGGAAATCACTGTACAGGTGAAGACTTCTAACAAAGGCCGCAAGACTGGTTCGATCACAACAAAGACTGGAGCTGCTGCTGAGACTGCACCAGATCACGCACCAAGAACTTACACCAAAGACTCTAAGAGTTCTGCTGTGAAACCAGTTGGCCCAACAACACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b3507840778c12539470b983acd208b46cb4f952579069f4de51081ff342fd27
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5000
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank