Protein

View in Explore
Genbank accession
XEM82227.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVDHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVEYAGGGAIKGVMKIFSVVLKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNVGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTITFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEVTYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDSQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFSATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLVLKLRDGGVQSVRVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVSPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93905,83210 Da
isoelectric point:5,23086
aromaticity:0,09859
hydropathy:-0,36585

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
XEM82227.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-845 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XEM82227.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9494
Central domain 233 431 200 0,6721
C-terminal 432 852 420 0,1594
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-431
C-terminal
432-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Ijeoma
[NCBI] 		3241051 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XEM82227.1 [NCBI]
Genbank nucleotide accession
PQ139366 [NCBI]
CDS location
range 608 -> 3166
strand -
CDS
TTGGCGCTAGTAATTCACTATACCCGTAACGAAGACGGCACATTTGACGTCAAACGTTATCGCGATAACCCGATGAACTTCGTCGTGGACCACGTTCCAGACGGGGTACCGGTTCGCGTTTTCATAGACGAAATCGGAGAAGATAACGATGTAACGGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATCGTGGAATACGCTGGTGGCGGCGCTATTAAAGGCGTCATGAAGATTTTTAGTGTTGTCCTTAAACCGCTAGCGAAACTATTATCGCCATCAGTGAAAGGGGCATCCTCTAACCTCGCGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGTAACAACAAGGCCCGCCCTTACGAGCGCAGCTACGACATCTGCGGAACGGTGCAAACTATCCCAAATAACCTTATGTCTACGTATAAGGTGTTTAACGCTGCTGGTAAAATTGTAGAGTACGGATATTACGACGCCGGGCGTGGTTACCTCGACATACACCCTGAAGGTATAACTGACGGGGATACCCGTGTATCAGATATAACAGGCACGTCGGTTGCGGTGTATGCCCCGTACACATCGCCCAATAACACATCTACACCCCAGGTCATGGTAGGGGACCCCATAGAGCAGGGCCTGTACATTACCGTAGAATCTAACGAAGTCGACGGCGTGGTTCTTAAAGCGCCCAACGGCCTGGGTATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCCGGAAACGTTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGGTGTTGGTTCCTAATGATACGTTTTCGTTGGTGTCAGCGTGGACAAATACGGACGTCGACTTGTCCGGCGGCGGGTACCAGGTGTTAAGCGTATCTGAAGGGACCATTACCTTTATCGTGCCCGGCGGCCTTATTGGGCGGTGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGACGGGGAAGCGTCGCTGCAACCGGATAACACGTACGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATAGCCGCGGCCAATGGGATGTACAAAGACAACGGCAAGTCAAAAACACTGGCGTCTGTTACCGCCGAGATACAGTACCAGCTACTTGATGAAAATAGCGTTCCTTATGGGCCAATATACACCGCACAAGGAACCGTGTCCGGGCGAACCCCAGACTACAACGGTGTCACTATCTACGCCGACCTGCCGGTTGTGTCGCGGGTGCGGGTGCGCGCCAGAAGGGTAACGGACCTCGACTTTAATTTCGAGGGGTCTGTGGTTGATGAGGTAACGTACGTTAACTTGTACGGGCAAACGCGCGATAACACCCCGCACTACGGCAACAGGACTACCGTACACTCGATGCGCAAACAGACACCGCGTGCTGCGGAAGTTAAGCAACCACAGTTGCGCATGATTGCGACCGAAATGGTATACAAATACCTCGGTAATGGCGTTTTTGAGGATACGATGACTCCCAATACCCAGGCCGTGCAATCTCTCATCCGCCTGGCACGTGACCCGGATGTGGGGGGTTTAAACCTGACGGTACGCAACATGGATAAGTTACTTGCTGTTCAGAACGAGGTTGAAGCGTATTTTGGTGACAAACAGGCGGGGGAATTTTGCTACACGTTTGATGACTATAAAACCACTATGCAGGACATAGTTAGCACTATAGCCGACGCCATATTCTGCACCCCATATCGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCCGAGATGGTGTTCACCCACCGAAGCAAGGCCGGTACTTCTGAAAAGTGGACCAGAACATTTAACGATTCTCAGGTTTTTGACAGCCTTAAATTCTCATACATAGACCCTAAGACGAACGTCAAAGAGACTATAACCATACCCGAAACTGGGGGCCTTAAAACGGAGACTTACGACTCAAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGTCATCAGAAAAACATATTGAAGAAGATTTCAGTGTCTTTTAGCGCCACTGAAGAAGGGATCTTTGCCCTCCCAAATCGTGCCGTTAGTGTGGTTAAGGGTTCCCGTATGGCTACCTACGACGGCTACGTAACTGCGGTGAACGGCCTCACCGTGGAGCTTTCACAGCCAGTTAAGTTCACCTCCGGGGATGACCATTCTTTGGTTCTTAAACTGAGAGACGGTGGCGTCCAAAGTGTTCGTGTAGTCCCTGGTGCGCATGACCGACAAGTAATTATGACGTCTGTGCCGCAAGAAGCCATTTACACGGGTAATAGCGCCCTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACAGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTCAACTACGACAAGGATTTCTACAAGTTTGACAACGTATCGCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1dcb78523cd51da4af714d7069bc5fd6b0f93c69cd7e0fc4499fb3ae4e93c2ee
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2991
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Exploring Lytic Salmonella Phages as Potential Alternatives to Antibiotics: Isolation, Characterization, and Stability Assessment of Jerseyvirus Ijeoma and Apdecimavirus Ayanbimpe Olorundare,O.O., Nnadi,N.E., Nimzing,L. and Ayanbimpe,G.M. 2025-08-21 — GenBank