Protein

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UniProt accession
A0A2D0WXX0 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,88
Protein sequence
MINKLNPIDLNCSIFTVYDYTGLSMQEILCQFFSKINELIDSQNQVIDLTKWLVGQGLKEEVAKQLNQWLIDGTLANIINETVFRDLNNKINSNIENIKNNKKEIDKLVTVWNNLKCFNVVDFGAIGDGETNNNKAFENAINSCVENNVRGLLIPTGKFYITEGINTKGVKIIGMGDPYIPFLEWEYTRPNSKLDEYKKYLNKCRGSIITSDKNINIFTNGLYAENIGIFGNRRALSQNGVGQMDGGFGNWIEIEKVKIHGCGNCGINAEYGLITPIINQCWLYQNGNNGIRIEKNKGTYTGETNALIIEKCFINRNESHGIYLDVKGRAYTIKNNDLEQNGEMSDPLRNNKGTDYNDIVYGCYMKVEGEGGFTSGSIDFSNNYSEETLGLLYLESPDNKICQGVKFESNMWRPYNQELYSNGLLLKGWIEGVKIGNNNMYGRHKVRIINANTYGIETDTDITNPVYKNKNISIEKHYDYNGTMVDFRNTGRVEKYSIENMIQSASYDGSTYTNVYLNKPSVPYELQEDGQGNKLIGTTFLTADGTSIGLVVDFSWTHGLFKIRKDRTSLIKTGNAKFMGNGGFTTINGGNTPVKIYVDHDNEIVIL
Physico‐chemical
properties
protein length:607 AA
molecular weight: 68411,34160 Da
isoelectric point:5,56490
aromaticity:0,10214
hydropathy:-0,45684

Domains

Domains [InterPro]
DC_0396
ATT
1–175
DC_0396 DC_0525
Coil
Unmapped
88–108
Coil IPR011050
IPR012334
STR
117–552
IPR012334
IPR024535
ENZ
118–341
IPR024535
A0A2D0WXX0
1 607
Architecture
ATT
STR
RBD
ATT 1-175 | STR 176-552 | RBD 553-607
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A2D0WXX0
1 607
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,9870
Central domain 133 501 370 0,9835
C-terminal 502 607 105 0,9196
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-501
C-terminal
502-607

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPS1
[NCBI] 		1983541 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
e451493e91bca52e075be88101dbd6655efbf5a9f01e32edae9cba5b40d6a1df
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6730
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50