Protein

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Genbank accession
CDM21577.1 [GenBank]
Protein name
phage virion protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
Protein sequence
MTDTIMGADVNVLDGRSLSLEMVRLRNEVGALERNNTLNIFTSLDQLGLPITASMTQIAERLPQNSLLAIDATAGTQGATLPLPYFTHPTQAYMSGFLTAWRGNDVKKAYFEWRNEYLVAHADYNTYNVPATLPTKWTFMVDSIINKNGFGPGAFGNLMSNIWVPGTYYFNSSQMPGFTDSPTTAASFLKVDNWQGLPTSDRLYTLIENNGSTRTYTRQNANNWRNVPVVFPQSVADSELRVGDMKIDGNGRLHMRLGANLVGQIIYKGEPQQ
Physico‐chemical
properties
protein length:273 AA
molecular weight: 30345,87160 Da
isoelectric point:5,92361
aromaticity:0,10256
hydropathy:-0,30549

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CDM21577.1
1 273
Domain Start End Length (AA) Confidence
N-terminal 1 52 52 0,4937
Central domain 53 251 200 0,0327
C-terminal 252 273 21 0,9948
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-52
Central
53-251
C-terminal
252-273

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CR44b
[NCBI] 		1455075 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Kayfunavirus
Host Citrobacter rodentium
[NCBI] 		67825 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CDM21577.1 [NCBI]
Genbank nucleotide accession
HG818823.1 [NCBI]
CDS location
range 33922 -> 34743
strand +
CDS
ATGACTGATACAATTATGGGTGCAGACGTAAACGTCCTTGACGGGCGTTCCCTTTCGCTGGAGATGGTCCGTCTCCGCAACGAGGTTGGCGCTCTGGAGCGTAACAACACTCTGAACATCTTCACGTCTTTGGACCAGTTAGGTCTGCCTATTACAGCCTCAATGACGCAGATTGCTGAGAGACTTCCTCAGAACTCACTTCTGGCTATAGACGCAACGGCTGGGACTCAAGGTGCTACCCTTCCTCTTCCGTACTTCACGCATCCGACACAAGCGTATATGTCTGGGTTCCTTACAGCGTGGCGTGGTAATGACGTCAAGAAGGCTTACTTCGAGTGGCGTAACGAGTACTTAGTGGCGCACGCAGACTACAACACGTATAACGTACCTGCTACACTTCCGACCAAATGGACGTTCATGGTTGACAGTATTATTAACAAGAACGGATTTGGCCCAGGCGCATTCGGAAACCTAATGTCTAACATCTGGGTTCCGGGAACTTATTACTTCAACTCATCTCAGATGCCAGGATTCACCGACAGTCCGACTACCGCTGCTAGCTTCCTCAAGGTTGATAACTGGCAAGGGCTTCCTACGTCAGACCGACTGTATACGCTAATCGAGAACAATGGGTCAACGCGTACCTATACTCGTCAGAACGCTAACAACTGGCGTAACGTACCAGTGGTCTTCCCACAGTCAGTAGCTGATAGTGAGCTTAGGGTCGGGGACATGAAGATTGATGGTAACGGTAGACTTCATATGCGACTAGGCGCTAATCTGGTAGGTCAGATTATCTACAAGGGTGAGCCACAACAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6e7f0747ba522dae0fa2d8ce5ff28e461e5333ae2e9d37fa6237fb79d16f66aa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7057
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Citrobacter rodentium bacteriophages and their in vivo assessment as antimicrobial agents Toribio,A.L. 2010 — GenBank