Protein

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Genbank accession
QPB08539.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MADLRYGTTVGGQALFHAGNTDQLLEVFNYKKPTMDLTKLNLTGMGSIAGTLANIPNAPLFIKQNSTSLGIDANEILSSAELNIGTLADSYLSITTNGQTAAKFQSSGIRFYKDIGIKCEPTLTLSVGDSNTGFRWVSDGRIRTVANGVDIDEINSTQRSLFTNLNINGHDITNAEKIHLKNYITLESGGIDFLPPTSASGWARGGTWYQPGSTSVREYGLGVLGSGSESSFFYIGIGDAWSNWALRVNKGVRNVDFFQAPTINGSSMNDIYQPLNSKLTAFVNSEWSVQSSQDLLCRGKRALVGTSTVLHMNYNGDFDKVRVQSELEVAGGLVAEGGLTRKTHSSGLMIGSYNNVGSNGQYTNPIYTIGSSYKPTDTDLVNMYGIGYASSASAPFLSEAKAAGVSNWGLYVVAAGNPGIFFEGSGGKIWAKGTVISEDGFFSRAGTHSMKSNNVDKWIWATGTNYNWGLFWDTGANQIQFRGNNVIKTHVDLDTGHLTTAGNVFVNNAEPYICLQDTTHRSVFMHYNVGKFSIARGTGTNSTTWLTETNPLSLDIETGDLAIKGTISEGGSLLSSKYLGISAKAADSALLNSETPEYWSSKRKSVQYIEVGGDADTYYPVVFSTTGVDFAWDELFITRYYSWTAPDTWYNSTHKGGLTFGVKWTGDGSWGGNMKELQVTAFSESYSQMVCGLNLSTSGLVVWLRGGGAKYSVRGATGKWMNVSIKYDGFTDGRDVTYNSRTAASLNAFYENELHPRMPIRGKASIYDNGSRVYSPNNIPSSEDIGVFDFAGSSEYPRLVTPSGIWVRVGTSSGGGLIPYTNKIASLGTSSWQFKSIYGETLYENGLSLSTRYLGKTSRAADTTLFEGYNVNYFLRRVNNANDYKADSDRMYGQEFANKLPVGQFPGGTYTYGQLLTFNDSSARLRLYAPHHEEGYSALYVSTGWGTDIKSWERILTKSYADSLYVAASGGAAPKVVVTNSTSNSSYPLVWHNNSNSLFDTVSKLTFNPYTGNLTVQGGVFANGYFYNSDVRLKESVKDLTAEESVSLIKGFIPKKYRFKESGRYSMGFLAHEVEELRPDMVAKSSQEEDGIKSVNYLDTIAPIVKSLQYALEEIEELKKEVSRLKGV
Physico‐chemical
properties
protein length:1128 AA
molecular weight: 123090,59890 Da
isoelectric point:6,12874
aromaticity:0,11613
hydropathy:-0,30541

Domains

Domains [InterPro]
DC_1667
STR
400–1128
DC_1667
IPR030392
CHP
1029–1082
IPR030392 Coil
IPR030392
CHP
1029–1122
IPR030392
QPB08539.1
1 1128
Architecture
STR
STR 400-1128
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB08539.1
1 1128
Domain Start End Length (AA) Confidence
N-terminal 1 51 51 0,6752
Central domain 52 250 200 0,3830
C-terminal 251 1128 877 0,8347
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-51
Central
52-250
C-terminal
251-1128

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Va2
[NCBI] 		2783668 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB08539.1 [NCBI]
Genbank nucleotide accession
MW073017 [NCBI]
CDS location
range 63133 -> 66519
strand +
CDS
ATGGCTGATTTAAGATATGGAACTACTGTAGGTGGTCAAGCGTTGTTCCATGCAGGTAACACAGACCAGCTTCTAGAAGTCTTCAACTACAAGAAACCTACTATGGATTTGACTAAGTTGAATCTTACTGGTATGGGTTCAATAGCTGGTACCTTGGCTAATATTCCTAATGCACCTCTGTTCATTAAACAGAACTCTACATCGTTAGGTATTGATGCTAATGAGATTCTAAGTTCAGCAGAACTTAATATAGGGACTCTGGCAGACTCCTATCTATCTATAACTACTAACGGTCAAACTGCTGCCAAATTCCAGAGTAGTGGTATTAGATTCTATAAAGATATAGGTATCAAATGTGAGCCTACTCTTACTCTGAGTGTCGGTGACTCAAACACTGGATTCAGATGGGTGTCTGATGGTCGTATTCGCACTGTAGCCAATGGTGTGGATATCGATGAGATTAACTCAACTCAGCGTTCATTGTTCACGAACTTGAACATTAACGGTCACGATATCACTAACGCTGAGAAAATTCACCTTAAGAATTATATCACTTTAGAGAGTGGTGGTATTGACTTCCTACCCCCTACATCAGCATCAGGCTGGGCACGTGGAGGTACTTGGTACCAACCAGGTAGTACTAGCGTACGTGAGTACGGTCTGGGAGTATTAGGTTCAGGGTCTGAGTCTAGCTTCTTCTACATTGGTATCGGTGATGCTTGGTCTAATTGGGCGTTGAGAGTTAACAAAGGTGTACGTAATGTAGATTTCTTCCAGGCACCTACGATTAATGGCTCCTCCATGAATGACATCTACCAACCACTCAACTCTAAGTTGACTGCGTTCGTAAACTCTGAATGGAGTGTTCAGTCAAGTCAAGACTTGTTATGTCGTGGTAAACGTGCATTAGTCGGAACCAGTACAGTTCTTCATATGAACTACAACGGTGACTTCGATAAAGTACGTGTACAGAGTGAACTAGAAGTGGCAGGTGGTCTTGTAGCTGAAGGTGGTCTAACTAGGAAAACTCACTCTTCAGGATTGATGATTGGTTCTTACAACAATGTAGGTTCGAATGGTCAGTATACTAACCCTATCTACACAATTGGTAGTTCTTATAAACCTACTGATACTGATCTAGTTAATATGTACGGTATCGGTTATGCTTCTTCAGCATCTGCTCCATTCTTATCGGAGGCTAAAGCAGCAGGTGTATCGAACTGGGGTCTGTATGTCGTAGCAGCAGGTAATCCTGGTATTTTCTTTGAAGGTAGTGGTGGTAAAATCTGGGCTAAAGGTACTGTAATCTCTGAGGATGGTTTCTTCAGTCGTGCTGGTACCCACTCTATGAAGAGTAACAACGTAGATAAATGGATTTGGGCTACAGGAACTAACTACAACTGGGGTCTATTCTGGGATACAGGAGCTAACCAGATCCAGTTCCGTGGTAATAATGTCATCAAGACTCATGTGGACTTAGACACAGGTCATCTCACTACTGCAGGTAATGTATTCGTAAATAATGCAGAACCTTACATCTGTCTACAGGATACTACTCATCGTTCTGTGTTCATGCACTACAATGTTGGTAAATTCTCTATTGCTCGTGGTACAGGGACTAACTCGACAACTTGGTTGACTGAAACTAATCCTTTATCTCTCGATATTGAGACAGGTGACCTAGCAATTAAAGGTACAATCTCTGAAGGTGGTTCACTCCTATCTAGTAAATACTTAGGTATCTCAGCTAAAGCAGCAGACTCTGCACTTCTAAACAGTGAGACTCCTGAGTACTGGTCTTCTAAGCGAAAAAGTGTACAGTACATTGAAGTAGGTGGAGATGCAGATACTTACTACCCTGTAGTCTTCTCTACCACTGGTGTGGACTTCGCATGGGATGAACTGTTCATTACTCGTTACTACTCTTGGACTGCTCCAGACACTTGGTACAACTCAACACATAAAGGTGGCTTGACATTTGGTGTTAAGTGGACAGGTGATGGTTCTTGGGGTGGTAACATGAAGGAGCTTCAAGTTACTGCATTCAGTGAGTCATACAGCCAGATGGTCTGTGGTCTTAATCTGAGTACTTCAGGTCTAGTGGTATGGTTACGTGGAGGTGGTGCTAAGTATTCTGTACGTGGTGCCACTGGTAAGTGGATGAATGTCAGTATCAAGTACGATGGTTTTACTGACGGAAGAGATGTAACTTATAACTCACGAACTGCAGCATCTCTAAATGCGTTCTATGAAAATGAACTACATCCTCGTATGCCAATTCGTGGTAAAGCTAGTATTTACGACAACGGCTCCAGAGTTTACTCACCTAACAACATACCTTCAAGTGAAGATATCGGGGTATTTGACTTCGCAGGTAGTTCAGAGTACCCTCGTCTAGTTACTCCTAGTGGAATCTGGGTTAGAGTAGGTACAAGTTCTGGTGGTGGTCTAATTCCTTATACTAATAAAATTGCCTCTTTAGGTACAAGTTCTTGGCAGTTTAAGTCGATCTACGGTGAGACTCTATACGAAAATGGTCTTTCTTTATCTACTAGATACTTAGGTAAAACTTCTAGAGCTGCTGACACTACTCTGTTTGAAGGTTACAATGTAAACTACTTCCTACGAAGAGTTAACAATGCCAACGACTACAAGGCAGACTCTGATCGAATGTATGGTCAAGAGTTTGCTAATAAACTTCCTGTAGGTCAGTTCCCTGGAGGTACTTACACTTATGGTCAGCTACTAACGTTTAACGACTCCAGTGCAAGACTAAGACTGTATGCACCTCACCATGAAGAAGGCTACTCTGCTCTGTACGTTAGTACAGGTTGGGGTACTGATATCAAGAGCTGGGAAAGGATTCTAACTAAGTCGTACGCTGACAGTCTTTACGTTGCTGCTTCAGGTGGTGCTGCACCTAAAGTTGTAGTTACTAATAGTACTTCCAACTCCAGCTACCCACTTGTATGGCATAATAACAGTAACTCTCTATTCGATACTGTTTCTAAGTTGACCTTCAACCCGTACACAGGTAACTTGACTGTTCAAGGTGGTGTGTTTGCGAATGGTTACTTCTACAACTCTGACGTTCGTTTGAAAGAGTCTGTGAAAGATTTGACTGCAGAAGAGTCTGTTAGTCTTATCAAAGGATTCATTCCTAAGAAATATCGATTCAAAGAAAGTGGTCGATACTCTATGGGTTTCCTTGCTCATGAAGTTGAAGAACTAAGACCAGACATGGTAGCTAAGAGTAGTCAAGAAGAAGATGGAATCAAATCTGTTAACTACTTAGATACAATCGCACCTATTGTTAAGTCTCTTCAGTACGCTCTTGAAGAAATTGAAGAACTTAAGAAAGAGGTTAGTAGATTAAAAGGAGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2d9fc68498cd35bc127f6a6b607f500ca5ef23e5053784cdd7b6276074524cc8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2760
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50