Protein

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Genbank accession

XSB41880.1 [GenBank]

Protein name

hypothetical protein

RBP type

Evidence RBPdetect

Probability 0,84

Protein sequence

MSKKFTMTLLSSSLAGLLVMSGGVSAQEEKYTVQYAIGKYGSTYEVVKTGDNGNFRYEVKEKNGKRSLFTFDSEGNVTVKGKGITHTLHDPALKDFAKAVEGNSNTGHKLINSDVRGVYNKVYGLEKTEITGFSVEDGVNGKVSLGSDAKVSGKFSVAVGNGAKATEKASTSVGSWSAALGQQSVALGVGTYAYADASTAAGTAAYVDGSAIYGTAIGNYAKVDKNATEGVALGAKAKVDKNATEGVALGAKAISAHKNSVALGANSRTTRDNEVYIGYEEASGKAYKTRTLGGLTDGTRPSDAATVRQVDRVKDSVEQLAQDTNTRLVVEAKKSREYTDSRTTVGVNPDGKLTRAEGATKTIAVNDGLVALSGRTDRIDYAVGSVDRRVTKNTQAIQSNTRQLQEHNARLNSQQRQIRENHEEMKRAAAQSAALAGLFQPYSVGKFNATAALGGYSDKQAVAVGVGYRFNEQTAAKAGIAASDGDVSYNMGVNFEF

Physico‐chemical properties

protein length:	497 AA
molecular weight:	52319,42780 Da
isoelectric point:	9,24491
aromaticity:	0,06841
hydropathy:	-0,43159

Domains

Domains [InterPro]

DC_1454
ATT
1–126

DC_1454 IPR008640 IPR008640 G3DSA:2.60.40.4050 G3DSA:6.10.250.1970 G3DSA:6.10.250.1980 G3DSA:3.30.1300.30

IPR011049
STR
117–314

IPR011049 G3DSA:6.10.250.1980 IPR005594

IPR011049
STR
117–315

IPR011049 Coil

IPR011049
STR
125–241

IPR011049 IPR008640 IPR045584

cd12820
STR
143–272

cd12820

XSB41880.1

1 497

Architecture

ATT

STR

RBD

ATT

ATT 1-126 | STR 127-346 | RBD 347-438 | ATT 439-497

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1454	ATT	DC_1454	1	126	Novel HMM	DC_1454	N-terminal	Low	Positional only	5 proteins / 5 hits
IPR011049	STR	IPR011049	117	314	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR011049	STR	IPR011049	117	315	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR011049	STR	IPR011049	125	241	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR008640	Unmapped	-	143	163	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
cd12820	STR	DC_0258	143	272	InterPro cluster	cd12820	Central	Low	Positional only	46 proteins / 51 hits
IPR008640	Unmapped	-	179	204	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
G3DSA:2.60.40.4050	STR	G3DSA:2.60.40.4050	242	283	Merged direct domain	G3DSA:2.60.40.4050	Central	Low	Positional only	5 proteins / 5 hits
IPR008640	Unmapped	-	244	267	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
G3DSA:6.10.250.1970	STR	G3DSA:6.10.250.1970	296	346	Merged direct domain	G3DSA:6.10.250.1970	Central	Low	Positional only	3 proteins / 3 hits
G3DSA:6.10.250.1980	RBD	G3DSA:6.10.250.1980	347	411	Merged direct domain	G3DSA:6.10.250.1980	C-terminal	Low	Positional only	5 proteins / 5 hits
G3DSA:6.10.250.1980	RBD	G3DSA:6.10.250.1980	347	420	Merged direct domain	G3DSA:6.10.250.1980	C-terminal	Low	Positional only	5 proteins / 5 hits
Coil	Unmapped	-	397	431	Coils	Coil	-	-	-	-
IPR045584	RBD	IPR045584	403	497	Merged direct domain	Pilin-like	C-terminal	Low	Positional only	5 proteins / 5 hits
G3DSA:3.30.1300.30	RBD	G3DSA:3.30.1300.30	423	497	Merged direct domain	G3DSA:3.30.1300.30	C-terminal	Low	Positional only	62 proteins / 62 hits
IPR005594	ATT	DC_0200	439	497	InterPro cluster	Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain	C-terminal	Medium	Text match	43 proteins / 43 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage PhiR12_3 [NCBI]	3416474	Viruses >
Host	Escherichia coli [NCBI]	562	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

XSB41880.1 [NCBI]

Genbank nucleotide accession

PV340552 [NCBI]

CDS location

range 42801 -> 44294
strand +

CDS

ATGAGTAAAAAGTTTACAATGACACTCCTGTCATCTTCTCTGGCCGGGCTTCTGGTGATGAGTGGTGGGGTGAGTGCGCAGGAAGAAAAATACACAGTGCAGTATGCCATAGGTAAATATGGCAGCACCTATGAAGTTGTAAAGACAGGCGATAATGGTAACTTCAGATACGAAGTAAAAGAGAAAAACGGCAAGAGGTCACTTTTCACATTTGATTCAGAAGGTAATGTGACCGTTAAAGGTAAGGGTATCACCCATACACTTCATGACCCGGCGCTGAAAGATTTTGCAAAGGCTGTTGAGGGTAACAGTAACACAGGTCACAAGCTGATAAACAGTGATGTTCGTGGCGTGTACAACAAGGTGTATGGCCTGGAAAAAACAGAAATTACAGGTTTCAGCGTCGAAGATGGGGTGAATGGGAAGGTTTCTCTGGGTAGCGATGCGAAAGTCTCTGGTAAGTTCTCAGTAGCTGTTGGTAACGGTGCTAAGGCTACAGAAAAAGCGTCAACATCAGTGGGATCATGGTCTGCAGCACTAGGACAGCAAAGTGTGGCTTTAGGTGTGGGAACATATGCCTATGCAGATGCTTCAACAGCCGCCGGAACAGCTGCTTATGTTGATGGTTCTGCTATTTATGGTACCGCTATAGGTAATTACGCAAAAGTGGATAAAAATGCAACTGAAGGTGTTGCATTAGGAGCCAAAGCAAAAGTGGATAAAAATGCAACTGAAGGTGTTGCATTAGGAGCCAAAGCAATATCTGCACATAAAAACAGTGTGGCCTTAGGGGCAAACTCCCGAACCACTCGTGATAATGAAGTTTACATTGGTTATGAAGAGGCTTCTGGTAAAGCATATAAAACCCGCACCCTTGGAGGATTGACTGATGGAACTCGCCCATCCGATGCAGCAACTGTTCGTCAGGTTGATCGGGTAAAAGACAGTGTTGAGCAACTGGCTCAGGATACGAATACCCGCCTTGTAGTCGAAGCGAAAAAGTCTCGTGAATATACAGACTCCAGAACGACAGTTGGTGTGAACCCTGACGGAAAACTTACCCGTGCAGAAGGTGCGACTAAAACTATCGCCGTCAATGATGGTCTCGTTGCTCTGTCTGGCAGAACAGACCGTATTGATTATGCAGTTGGTAGCGTTGACCGCCGGGTTACTAAAAATACACAGGCTATTCAGTCCAATACTCGCCAGTTGCAGGAGCATAATGCACGCCTGAACAGCCAGCAGCGTCAAATTCGTGAGAATCACGAAGAGATGAAGCGTGCAGCAGCACAGAGTGCAGCGCTGGCGGGGCTTTTCCAGCCGTACAGTGTGGGGAAATTCAACGCCACTGCTGCCCTGGGGGGGTACAGTGATAAACAGGCTGTTGCCGTGGGTGTTGGTTACCGTTTCAACGAGCAGACCGCAGCGAAAGCGGGTATTGCAGCGAGTGATGGCGATGTGTCCTACAACATGGGCGTTAACTTCGAGTTTTAA

Genome Context

Tertiary structure

PDB ID

03fc12fff6f1fd574597c1d73ca42ad94aefd491bcef4e7b02009bd9ce95f8c4

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8010

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
E. coli prophages encode an arsenal of defense systems to protect against temperate phages	Brenes,L.R. and Laub,M.T.	2025	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature