Protein

View in Explore
Genbank accession
XRM24228.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTAKYFAILTNQGAARLANAAALGTKLNLTQMAVGDANGTLPTPDPAQTKLINQKRIAPLNLLTVDPANTSQIIAEQIIPENEGGFWIREIGLYDDDGILIAVANCPETYKPQLQEGSGRTQTIRMILIVSSTSAITLKIDPSVVLATRQYVDDKVIEVKAYADDLMKKHVDAANPHSQYPLIANALKEMADAGLVNKVLENLGLKGAAKRDVGNGSGQLPDMSLFASSLGTPGYQKLPSGLIIQWGLASGAASYTVTFPVSFPGRVLALLAIPHTTQAAGVASVGIANCSDLGRSQFYIVIGKVAQGAMIEYERACFWVAIGV
Physico‐chemical
properties
protein length:324 AA
molecular weight: 34322,13020 Da
isoelectric point:6,31586
aromaticity:0,06173
hydropathy:0,13827

Domains

Domains [InterPro]
IPR051934
Unmapped
1–160
IPR051934 G3DSA:2.60.40.3940
IPR022225
ATT
1–150
IPR022225 IPR054075
DC_0787
STR
1–309
DC_0787
XRM24228.1
1 324
Architecture
ATT
STR
RBD
ATT 1-150 | STR 151-309 | RBD 310-323 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Midge
[NCBI] 		3411023 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM24228.1 [NCBI]
Genbank nucleotide accession
PV287706.1 [NCBI]
CDS location
range 12568 -> 13542
strand +
CDS
ATGACCGCAAAATATTTTGCCATTCTGACCAATCAGGGCGCGGCGCGACTGGCTAACGCGGCGGCACTCGGTACCAAACTCAACCTGACGCAGATGGCCGTCGGTGATGCGAATGGTACGCTGCCGACCCCTGACCCGGCGCAGACGAAGCTCATTAACCAGAAGCGCATCGCGCCGCTGAACCTGCTGACCGTTGACCCGGCCAATACCAGCCAGATTATCGCGGAACAGATTATTCCCGAGAATGAGGGCGGTTTCTGGATCCGCGAGATTGGTCTCTATGACGACGACGGCATTCTGATTGCCGTGGCGAACTGCCCGGAGACCTACAAACCACAACTGCAGGAGGGAAGCGGCCGCACGCAGACCATTCGCATGATTCTGATTGTGTCGAGCACGTCGGCAATCACCCTGAAAATCGACCCGTCGGTCGTGCTGGCAACGCGCCAGTATGTCGACGACAAGGTTATCGAGGTAAAAGCCTACGCTGATGACCTGATGAAAAAGCACGTCGATGCAGCTAATCCGCACAGCCAGTACCCCCTGATTGCTAATGCGCTTAAAGAAATGGCTGATGCCGGTCTTGTCAATAAGGTTCTGGAGAACCTCGGGCTTAAAGGGGCTGCAAAGCGGGATGTAGGCAATGGCAGCGGCCAGCTACCGGATATGAGTCTATTCGCCAGCTCTTTGGGAACGCCCGGTTATCAAAAATTACCGTCTGGCCTAATTATTCAGTGGGGGCTTGCGAGCGGTGCAGCAAGTTATACGGTTACTTTTCCTGTGAGTTTTCCGGGGCGGGTGTTGGCTTTGCTGGCAATCCCGCATACCACTCAGGCCGCTGGGGTGGCTTCAGTTGGTATCGCAAACTGTTCTGATTTGGGGAGGTCGCAGTTTTACATCGTGATTGGAAAGGTGGCTCAGGGAGCAATGATTGAATATGAACGCGCCTGTTTCTGGGTCGCCATTGGCGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
672fd746371b31300a8cb72135535e114cd8af8069ffcbf4af1027cb044480a1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8826
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Escherichia phage Midge Ripberger,P.E., Ramsey,J. and Valencia-Toxqui,G. 2025 41170982 GenBank