Protein

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Genbank accession
XCO56142.1 [GenBank]
Protein name
tail-collar fibre protein
RBP type
TF
Evidence RBPdetect
Probability 0,51
Protein sequence
MGSTLTTIGRSKLASATPENQLNVTEIAVGDGNGGYPPISPSTTSLANEVWRGNASLPIRTDDDLVIIFEGSIPANIGGFVVREVGIFDDAGDLIAIGTTSEIEKPDLSSGSSVALTVRLHVLLDNASQVTLMFNDTTTIDHAGLGNRSAADSHPASAISTDALPDIGANAESDVQAVLALLKSGAIKRHQSSLSDSTDDRLLLTGAFGLGGEAIVSSDWNAITKSGFYTNDNNSQSELPGPYNTMMMIHINKGSNATQICMRSSLDDPRTWRRSRSLSGGQDVWGAWVEIQSDGYREISNANLAVKSGFYSLPFSSGNNAPIENSGTLIVVQGGQNQNYISQTFIQSNENDEERIFVRHKKLIDWTSWVELHHSGNSDEVGFIKYAITTVTPTGRYIKANGAAVNRTAYADLFAKVGTFWGPGDGSTTFNVPDLRGEFIRTWDDGRGVDSGRSFGTFQADEFKSHTHNVQTYGGDTANNGNFIDSCDEASLAGSDNDAALATGGSETRPRNVSLIAWIRY
Physico‐chemical
properties
protein length:521 AA
molecular weight: 55708,56210 Da
isoelectric point:4,76324
aromaticity:0,07678
hydropathy:-0,31593

Domains

Domains [InterPro]
DC_1371
STR
1–395
DC_1371 SSF88874
IPR022225
ATT
3–139
IPR022225 cd19958 cd19958 IPR037053
IPR051934
Unmapped
4–137
IPR051934 SSF88874
IPR011083
ATT
384–440
IPR011083
XCO56142.1
1 521
Architecture
ATT
STR
ATT
STR
ATT 1-139 | STR 140-375 | ATT 376-440 | STR 441-521
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaM_R20L
[NCBI] 		3161149 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO56142.1 [NCBI]
Genbank nucleotide accession
PP839372 [NCBI]
CDS location
range 19604 -> 21169
strand +
CDS
ATGGGATCTACATTAACTACAATAGGCAGGTCAAAGCTTGCCAGCGCAACACCAGAAAACCAGCTTAACGTTACCGAAATTGCAGTTGGTGACGGTAACGGAGGCTATCCACCAATTAGCCCTAGCACCACATCACTGGCCAATGAGGTTTGGCGCGGAAATGCATCATTACCAATCAGAACTGATGATGATTTAGTCATTATATTTGAGGGTTCGATTCCGGCTAATATAGGCGGCTTTGTTGTTCGAGAGGTTGGTATATTTGATGACGCTGGCGATCTAATCGCTATCGGTACAACCTCAGAAATAGAAAAGCCAGATCTTTCATCGGGATCATCTGTTGCACTAACAGTTCGTTTGCATGTTCTTTTGGATAATGCCAGCCAAGTCACTTTGATGTTTAACGACACAACGACAATTGATCACGCTGGATTAGGAAACAGAAGCGCAGCGGATTCTCACCCAGCATCTGCAATTAGCACAGACGCACTACCGGATATTGGAGCTAACGCAGAATCTGACGTTCAGGCAGTTCTTGCTCTTCTTAAATCTGGAGCGATAAAAAGGCATCAATCATCACTTTCAGATTCAACAGATGATAGGTTGTTACTTACCGGCGCGTTTGGTTTGGGCGGAGAGGCTATTGTAAGTAGCGATTGGAACGCGATAACTAAAAGCGGATTTTACACCAATGACAACAACTCTCAGAGTGAATTGCCTGGTCCGTATAACACCATGATGATGATCCACATAAATAAGGGTTCGAACGCCACTCAAATATGCATGAGGTCAAGTTTAGATGACCCTAGAACATGGAGGAGGTCTAGGAGCCTTTCAGGAGGTCAGGACGTTTGGGGGGCATGGGTTGAGATCCAAAGTGATGGATACAGAGAAATATCTAACGCGAACTTGGCAGTCAAGTCTGGTTTTTACAGTCTTCCTTTTTCTTCTGGAAATAATGCGCCAATAGAAAATAGCGGAACTCTTATTGTTGTTCAGGGCGGTCAAAACCAAAATTACATTAGCCAAACGTTTATCCAATCAAACGAGAATGATGAAGAGCGAATTTTTGTAAGACACAAAAAGTTAATCGATTGGACTTCTTGGGTAGAGCTTCATCACTCAGGAAATAGTGACGAAGTTGGTTTTATTAAATACGCAATTACAACCGTAACTCCAACAGGCCGTTACATTAAAGCAAATGGCGCTGCGGTAAACAGAACAGCTTACGCCGATCTTTTTGCAAAAGTCGGAACATTCTGGGGTCCTGGTGATGGTTCAACTACATTTAACGTTCCAGATCTTCGTGGAGAATTCATTCGAACGTGGGACGATGGTCGCGGAGTGGATTCAGGGCGTTCTTTTGGTACATTTCAGGCTGATGAGTTCAAGTCTCATACCCACAATGTTCAAACTTATGGTGGTGACACAGCAAATAACGGCAATTTTATTGACAGTTGTGATGAAGCTTCACTTGCTGGAAGTGATAATGATGCAGCATTAGCAACAGGCGGTAGTGAAACAAGACCACGAAACGTATCCCTGATCGCTTGGATTAGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f969fbf241df07bf9a03995568386c0d2f15241321823586ab6765290d11ec5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7739
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50