Protein

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Genbank accession
YBB94875.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAKIARFNGNVQAFASNQQSGERRVFGATDPTESDLLSDQITPKFLRGWGTVGASEFPPIEWFNAVGFTTTQFISYLHQMGIPEWNPAQEYPTHGSMCIHNGEAWKRAPTWSLGDEPGVSQSWIGIEQSRRLKKITDRASLSGFVYEGQKVTWEGYHEQSDGGSNWGIIKLGAHIEDGFSIFSIDVNTYIEANLRGKSLNIRKAGAKGDKVTDDTARINIVKDYAEANVAGRFDSGLEIRIPNGDFRLLAPTGGVAVEITSSRITIGGISWATSVLYAPDADFDLVHFNGTTMSLYGCGMSRVRFNTPGNATAGCQLRTTKCIDGTFDKLYFVGHYDGLISDGCARTYFTSVIFTQDTRLTATSPRYAMDFKSDNGANNSNVHVSTYQIFMPDDRKTTYSVSIRGADGIYFNNGHHQGGVLVQPDGEGLNVCASVFWTQVYMDKADTENIIFTGQSAVYRNFQFNGAYLRGSVFGMVVNTTGLIEKVKFVGGEISGHTKSGVDFRNANSKKFKFVGTDFDGNSSDNVLGDSDIIVRGSSHIVSACNFSGGKANGRAVNLTADSTNCTVGDSDFSESTQGIKLIDSGTGNKLGVNNGVVFKSKGTATIADGTMSITVNHGMDIAPDIDSIQVTPRTSLNGGVDFWTSNVNSTSFDINVSNAVSDNAVFSWVIDLTG
Physico‐chemical
properties
protein length:675 AA
molecular weight: 73000,21840 Da
isoelectric point:5,51431
aromaticity:0,10222
hydropathy:-0,26059

Domains

Domains [InterPro]
DC_1912
STR
1–388
DC_1912 G3DSA:2.160.20.80 DC_2130
IPR012334
STR
186–404
IPR012334
IPR011050
STR
196–416
IPR011050
SSF141571
STR
282–521
SSF141571
YBB94875.1
1 675
Architecture
STR
RBD
STR 1-585 | RBD 586-674 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YBB94875.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 215 215 0,9919
Central domain 216 596 382 0,9893
C-terminal 597 675 78 0,9852
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-215
Central
216-596
C-terminal
597-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_Vp_PvVp11
[NCBI] 		3394205 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YBB94875.1 [NCBI]
Genbank nucleotide accession
PQ374832.1 [NCBI]
CDS location
range 34348 -> 36375
strand -
CDS
ATGGCTAAAATAGCTCGGTTTAACGGTAACGTTCAAGCGTTCGCATCAAACCAACAATCGGGAGAGCGTCGCGTTTTTGGCGCAACAGATCCCACAGAAAGCGACCTTTTATCAGATCAGATAACACCTAAGTTTCTTCGAGGGTGGGGAACTGTTGGTGCGTCAGAGTTTCCACCTATAGAATGGTTTAATGCAGTTGGTTTTACAACAACTCAGTTTATTTCATACCTTCATCAAATGGGAATACCAGAGTGGAACCCAGCGCAAGAGTACCCAACACATGGCTCAATGTGCATTCACAATGGAGAAGCATGGAAAAGAGCCCCCACATGGAGTCTTGGCGATGAACCTGGGGTTAGTCAGTCATGGATTGGCATTGAGCAATCTAGGAGACTAAAAAAAATAACGGATAGAGCATCCTTATCTGGTTTTGTTTATGAGGGTCAAAAGGTAACGTGGGAAGGATACCACGAACAATCCGATGGCGGGTCAAACTGGGGGATCATTAAGTTAGGGGCTCACATTGAGGATGGTTTTAGTATTTTCTCTATTGATGTAAACACTTACATAGAGGCAAACTTAAGAGGCAAATCGCTAAATATCCGCAAGGCTGGCGCTAAGGGCGACAAAGTAACGGATGACACGGCGAGAATTAACATAGTTAAAGACTACGCCGAGGCTAATGTAGCGGGTCGTTTCGACTCCGGTTTGGAAATAAGAATTCCTAATGGTGACTTTAGACTTCTAGCGCCAACTGGCGGTGTGGCGGTGGAAATAACGTCTAGTCGGATCACTATTGGCGGTATTAGCTGGGCCACTTCTGTACTGTATGCTCCAGACGCAGATTTTGACTTGGTACATTTCAACGGTACAACCATGTCATTATACGGTTGTGGCATGTCTCGGGTTCGATTCAATACTCCAGGGAACGCAACGGCGGGCTGTCAATTACGCACAACAAAATGTATTGATGGTACTTTTGACAAACTGTATTTTGTTGGCCATTACGACGGATTGATTAGTGATGGTTGTGCCAGAACGTATTTTACAAGCGTTATTTTTACCCAAGACACACGACTAACCGCGACCAGTCCGAGATATGCTATGGATTTTAAGTCGGATAATGGCGCTAACAATTCGAATGTGCACGTTAGCACTTACCAGATTTTTATGCCTGATGACCGCAAAACGACCTACTCAGTAAGCATTCGCGGCGCGGATGGTATTTACTTTAATAACGGCCACCATCAGGGGGGGGTATTGGTTCAACCTGATGGTGAGGGTTTAAATGTGTGTGCCAGTGTGTTTTGGACGCAAGTTTATATGGACAAAGCGGACACTGAAAATATTATCTTTACTGGGCAATCGGCGGTATATAGAAACTTTCAATTTAACGGCGCTTATCTTCGTGGTTCAGTATTCGGCATGGTTGTTAATACAACGGGACTCATTGAAAAAGTTAAATTCGTGGGCGGAGAGATTAGCGGCCATACGAAAAGCGGCGTAGACTTTAGAAATGCAAACTCTAAAAAGTTTAAATTTGTAGGTACTGACTTTGATGGGAATAGCTCTGATAACGTTCTGGGTGACTCCGATATTATCGTCAGGGGCAGTTCGCACATTGTGAGTGCGTGCAACTTTAGTGGGGGTAAAGCAAATGGTCGCGCCGTTAATTTAACAGCTGATTCCACTAACTGTACGGTCGGCGACTCCGACTTTAGCGAGTCAACGCAGGGCATTAAGTTAATCGACTCGGGTACGGGCAATAAACTAGGCGTTAACAATGGCGTCGTATTTAAGAGCAAAGGCACCGCAACTATAGCTGACGGCACCATGTCGATAACCGTTAACCATGGGATGGATATCGCTCCCGACATAGACTCAATTCAAGTTACACCGCGAACGTCTCTAAACGGGGGCGTAGACTTCTGGACTAGTAATGTTAACTCAACCTCGTTTGACATTAACGTATCAAACGCAGTTTCTGATAATGCTGTCTTTTCATGGGTAATTGACTTGACTGGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2d507365b79cd2186675aac43ced610470b5c8e9a3f366602fd8bdd1964b5aa4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8903
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50