Protein

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Genbank accession
YP_007676880.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MAAVSQSIPNLLGGVSQQPDPIKLQGQVREAVNAFLDPTFGCKKRPPTEFVGLLANNIPSDAKWFPIFRDNNEKYIVAIYKSGSPATIQVKVWDATTGTARTVTVDSSAQNYLDTTNLNTLNTLSLSDYTLISNSQRQVSMNQVALTATVEEALVVINSIAYNTTYSIDINRDGNTQQTIVYRAAELELTPGSYEVADAGNCSQHSAGDHTVSSGSKTGLQFRIVNQCAAYYDEATNAYISRYTANVILKNGGVGWRVGDTATVTEGGKSFTVRVSKEAFEYTYASDGIATFTTPSNASSGTLQIGDIITALKNAVNALTGYTCDSIGNVLRIKRSDTRSFNLSVRGGTTNQAMTVIKDTANDIAELPFQCFPDFLCKVNNTADSESDDYYVKFVPDAAGIPGAGSWEETVKPGIDTSLNSSTMPHALVRQANGTFKLEALNTSSAFGGWASKTVGDEATNPNPSFVGRGISNMFFFANRLGFLSEDAVILSQPGDYFNFFQVSAMTVSDADPIDLTASSTRPAILQAAIGTPKGLVLFAENAQFLVASQEVAFGPSTVKLTEVSTYTYRSITQPQSTGVSVMFVTEADTYSKILEMAVDSVDNRPTVADNTRIIPEYIPPDLKWATNSPNNSLLFWGDNTNTVYNFKFFNQGNERQIAGWSKWTFPTSVRMMGFDNDTSYIVCYDGTNSVLLKMELLDDPDSAPISTSFNTKFLPRLDYIHYKADLTTSTVGTNTKIYFPAGGFVTGATPVFIVSSGADAGYFIRPTVATDGGGTYMLIPSTFTSANYIIGLQYRMTVSLPAFYVTNDGKADRIDNPVVETLYLDLYYSGRYQVELERLGYSNYVHDVDVTRAGIYLANQPALEEVITKTVPIYCLGRDAKASIYADDPVPSAITSYSWQGHYNTRDVVKLKG
Physico‐chemical
properties
protein length:914 AA
molecular weight: 99373,86600 Da
isoelectric point:4,83975
aromaticity:0,10503
hydropathy:-0,16225

Domains

Domains [InterPro]
IPR058003
TTP
1–178
IPR058003 IPR058003
DC_1232
STR
135–291
DC_1232
YP_007676880.1
1 914
Architecture
TTP
STR
TTP
TTP 1-134 | STR 135-291 | TTP 292-907 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007676880.1
1 914
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,8920
Central domain 151 380 231 0,6712
C-terminal 381 914 533 0,2781
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-380
C-terminal
381-914

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage SS120-1
[NCBI] 		616674 Uroviricota > Caudoviricetes > Autographivirales > Banchanvirus SS1201 >
Host Prochlorococcus marinus subsp. marinus str. CCMP1375
[NCBI] 		167539 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676880.1 [NCBI]
Genbank nucleotide accession
NC_020872 [NCBI]
CDS location
range 30689 -> 33433
strand -
CDS
ATGGCAGCCGTATCACAGTCGATACCCAATCTATTAGGTGGTGTAAGCCAGCAACCAGACCCGATAAAACTGCAAGGACAAGTTAGAGAAGCTGTTAATGCTTTTCTAGATCCAACGTTCGGGTGTAAGAAAAGACCACCCACAGAATTTGTAGGACTACTAGCTAATAACATTCCAAGCGATGCGAAATGGTTTCCTATCTTTAGAGACAATAACGAGAAGTATATTGTAGCTATATATAAGTCTGGTTCTCCAGCAACCATCCAAGTTAAAGTATGGGATGCAACAACAGGAACAGCTAGAACAGTAACAGTTGACTCTAGTGCTCAGAACTATCTAGATACTACAAACTTAAATACTCTCAATACTCTATCTCTTTCTGACTATACGTTGATTTCTAATAGTCAAAGACAAGTCAGTATGAACCAAGTAGCTCTAACAGCTACCGTGGAAGAAGCTTTAGTTGTTATCAATAGTATTGCCTATAACACTACTTACTCTATTGACATTAATAGAGATGGTAATACCCAGCAAACGATTGTTTATAGAGCTGCAGAATTAGAACTTACCCCAGGTTCTTATGAAGTAGCAGATGCTGGTAACTGTTCACAGCACTCAGCTGGAGATCATACAGTTAGCTCAGGATCTAAAACCGGACTTCAATTTAGAATCGTTAACCAATGTGCTGCCTATTACGATGAAGCTACTAATGCTTATATCTCTAGGTACACAGCAAACGTCATCCTAAAGAATGGTGGGGTTGGTTGGAGAGTAGGAGATACAGCAACAGTTACTGAAGGTGGAAAGAGTTTCACTGTTAGGGTTAGTAAAGAGGCTTTTGAATATACCTATGCAAGTGATGGTATAGCTACGTTCACTACCCCCTCTAACGCCTCATCAGGCACCCTTCAAATTGGAGATATTATTACTGCTTTAAAGAATGCAGTTAATGCTCTTACAGGTTATACCTGCGATAGTATTGGTAATGTCTTAAGAATAAAAAGATCAGATACCCGCTCATTCAACCTCTCAGTTAGAGGTGGTACAACCAACCAAGCAATGACGGTTATTAAGGATACAGCAAATGATATAGCCGAGTTACCATTTCAGTGTTTCCCAGACTTCCTATGTAAGGTCAATAACACAGCTGATAGTGAATCGGATGATTACTATGTGAAATTTGTACCAGATGCTGCAGGTATTCCTGGAGCTGGTTCATGGGAGGAAACAGTCAAGCCTGGAATAGATACATCTCTCAACTCATCAACCATGCCTCATGCCTTAGTTAGGCAGGCAAACGGTACGTTTAAATTAGAAGCCTTAAATACGTCTTCTGCTTTTGGAGGATGGGCTAGTAAAACAGTAGGTGATGAAGCAACAAACCCTAACCCATCATTTGTTGGTAGGGGTATTTCTAATATGTTCTTCTTTGCCAACCGTCTTGGGTTCTTAAGTGAAGATGCTGTGATCCTTAGCCAGCCTGGAGATTATTTTAATTTCTTCCAGGTCTCAGCTATGACTGTTAGTGATGCTGACCCTATAGATCTAACAGCCTCATCTACTAGACCAGCTATTCTCCAAGCAGCAATAGGTACTCCAAAAGGATTAGTTCTATTTGCAGAGAATGCTCAATTCCTAGTGGCTTCACAAGAGGTAGCCTTTGGACCATCGACTGTCAAATTAACAGAGGTATCTACTTATACTTATAGGTCAATTACTCAGCCACAGAGTACAGGTGTCAGTGTCATGTTTGTGACTGAAGCTGATACTTACTCGAAGATCTTAGAGATGGCTGTGGACTCTGTAGATAACAGACCAACGGTTGCAGATAATACAAGAATCATTCCAGAATATATTCCTCCTGACTTGAAGTGGGCTACTAATAGTCCAAACAATAGTCTTCTATTCTGGGGAGATAATACGAATACTGTTTATAATTTCAAATTCTTCAATCAAGGAAATGAAAGACAGATAGCAGGGTGGAGCAAGTGGACCTTCCCTACATCAGTAAGGATGATGGGCTTTGATAACGATACTTCTTATATAGTTTGTTATGACGGTACTAACTCTGTTCTCCTGAAGATGGAGTTATTAGATGATCCAGATTCAGCCCCTATATCTACTTCATTCAATACTAAATTCTTACCTAGACTTGACTACATTCATTACAAGGCAGATCTAACTACTAGCACCGTAGGAACTAATACAAAGATTTACTTCCCAGCTGGAGGATTCGTTACAGGTGCAACTCCTGTATTCATTGTAAGTAGTGGTGCAGATGCTGGATACTTTATAAGACCTACTGTTGCTACAGATGGAGGTGGAACTTATATGCTTATTCCTAGTACCTTCACATCAGCTAACTATATAATTGGTCTTCAATACAGAATGACGGTATCTCTACCTGCTTTCTATGTAACCAATGATGGTAAGGCAGATAGAATTGATAACCCTGTAGTAGAAACCTTATATCTTGACCTCTATTATTCAGGTCGATATCAGGTAGAACTAGAGAGGCTTGGATATTCTAATTATGTCCATGATGTTGATGTTACTAGAGCTGGAATATACCTAGCTAACCAACCTGCTTTAGAAGAAGTAATTACTAAGACAGTACCTATCTATTGTCTAGGTAGAGATGCTAAGGCAAGTATCTATGCAGATGACCCCGTACCATCAGCTATCACTAGCTACTCATGGCAGGGCCATTACAACACTAGAGATGTAGTTAAACTTAAAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4a669044f4f3fe36e9ec7576c855d3f93fd783ef5d66b54bdd931ff6ed3391d3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8344
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-SSP9 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank